CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Aqu1.218342
(
Amphimedon queenslandica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Aqu1.218342
T48987_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aqu1.218342
RRM
49
111
IYIGRLPYQAREKDVERFFRGFGRIRDINLKNGFGFVEFDDYRDAEDAVYELHGRELLGERVI
Aqu1.218342
RRM
159
224
ILVENVSSRVSWQDLKDFMRTAGEITYADAHKQKTGEGIVEYATYEDMKNAIRKLNGTDLNGRKIR
Links
Other
RRM
family RBPs
Other
Amphimedon queenslandica
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_pm.C_690014
Branchiostoma floridae
estExt_fgenesh2_pm.C_690014
I
0.791
XP_798746.1
Strongylocentrotus purpuratus
XP_798746.1
I
0.783
XP_001180940.1
Strongylocentrotus purpuratus
XP_001180940.1
I
0.783
estExt_fgenesh2_pg.C_920027
Branchiostoma floridae
estExt_fgenesh2_pg.C_920027
I
0.744
SRSF5
Tetraodon nigroviridis
ENSTNIG00000016411
I
0.721
amel4_ncbi_hmm6583
Apis mellifera
amel4_ncbi_hmm6583
I
0.721
SRSF5
Takifugu rubripes
ENSTRUG00000017811
I
0.721
estExt_fgenesh1_pg.C_3000025
Capitella teleta
estExt_fgenesh1_pg.C_3000025
I
0.713
srsf5
Xenopus tropicalis
ENSXETG00000002211
I
0.713
CpipJ_CPIJ008634
Culex pipiens
CpipJ_CPIJ008634
I
0.713
CPIJ008634
Culex quinquefasciatus
CPIJ008634
I
0.713
Sfrs5
Rattus norvegicus
ENSRNOG00000005513
I
0.705
SRSF5
Pan troglodytes
ENSPTRG00000006488
I
0.705
SRSF5
Ochotona princeps
ENSOPRG00000008286
I
0.705
SRSF5
Otolemur garnettii
ENSOGAG00000015122
I
0.705
SRSF5
Sus scrofa
ENSSSCG00000002312
I
0.705
ENSPPYG00000005945
Pongo pygmaeus
ENSPPYG00000005945
I
0.705
SRSF5
Vicugna pacos
ENSVPAG00000006448
I
0.705
ISCW010321
Ixodes scapularis
ISCW010321
I
0.705
PHUM290500
Pediculus humanus
PHUM290500
I
0.705
SRSF5
Oryctolagus cuniculus
ENSOCUG00000009274
I
0.705
SRSF5
Tursiops truncatus
ENSTTRG00000003318
I
0.705
SRSF5
Tarsius syrichta
ENSTSYG00000007786
I
0.705
SFRS5
Taeniopygia guttata
ENSTGUG00000011425
I
0.705
SRSF5
Gorilla gorilla
ENSGGOG00000016462
I
0.705
SRSF5
Canis familiaris
ENSCAFG00000016589
I
0.705
A6MLI3_CALJA
Callithrix jacchus
ENSCJAG00000014884
I
0.705
SRSF5
Cavia porcellus
ENSCPOG00000005949
I
0.705
A6H7B7_BOVIN
Bos taurus
ENSBTAG00000011596
I
0.705
SRSF5
Anolis carolinensis
ENSACAG00000005143
I
0.705
Ame_R004936
Ailuropoda melanoleuca
Ame_R004936
I
0.705
AGAP004592
Anopheles gambiae
AGAP004592
I
0.705
srsf5b
Danio rerio
ENSDARG00000027734
I
0.705
srsf5a
Danio rerio
ENSDARG00000029818
I
0.705
SRSF5
Macaca mulatta
ENSMMUG00000022407
I
0.705
SRSF5
Monodelphis domestica
ENSMODG00000011362
I
0.705
SRSF5
Myotis lucifugus
ENSMLUG00000011939
I
0.705
SRSF5
Homo sapiens
ENSG00000100650
D
0.705
LOC100053264
Equus caballus
ENSECAG00000026873
I
0.705
SRSF5
Felis catus
ENSFCAG00000008848
I
0.705
Srsf5
Mus musculus
ENSMUSG00000021134
I
0.705