CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_kg.C_110664
(
Serpula lacrymans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh2_kg.C_110664
T56263_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_kg.C_110664
RRM
134
205
IVIKNIPFNVKRETLLDIIASLSIPTPYAFNYHLDQQGSFRGLAFANFRQSIDADAVVAALNGFDVQGRKLR
Links
Other
RRM
family RBPs
Other
Serpula lacrymans
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
19782_YOL123W
Saccharomyces mikatae
19782_YOL123W
I
0.000
19853_YOL123W
Saccharomyces paradoxus
19853_YOL123W
I
0.000
22111_YOL123W
Saccharomyces bayanus
22111_YOL123W
I
0.000
A7TSG2_VANPO
Vanderwaltozyma polyspora
A7TSG2_VANPO
I
0.000
ADL160W
Ashbya gossypii
ADL160W
I
0.000
CAGL0E01947g
Candida glabrata
CAGL0E01947g
I
0.000
CAGL0M03795g
Candida glabrata
CAGL0M03795g
I
0.000
CLUG_04544
Candida lusitaniae
CLUG_04544
N
0.000
DEHA0F18139g
Debaryomyces hansenii
DEHA0F18139g
N
0.000
estExt_fgenesh1_pg.C_chr_8.10049
Pichia stipitis
estExt_fgenesh1_pg.C_chr_8.10049
N
0.000
HRP1
Saccharomyces cerevisiae
YOL123W
D
0.000
KLLA0C12925g
Kluyveromyces lactis
KLLA0C12925g
I
0.000
KLTH0F18766g
Kluyveromyces thermotolerans
KLTH0F18766g
I
0.000
Kwal_21960
Kluyveromyces waltii
Kwal_21960
I
0.000
SAKL0C12672g
Lachancea kluyveri
SAKL0C12672g
I
0.000
ZYRO0C02574g
Zygosaccharomyces rouxii
ZYRO0C02574g
I
0.000