XM_002892513.1 (Arabidopsis lyrata)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		fgenesh2_kg.1__1097__AT1G10320.1 T00709_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__1097__AT1G10320.1 CCCH ZF 241 265
fgenesh2_kg.1__1097__AT1G10320.1 RRM 308 366
fgenesh2_kg.1__1097__AT1G10320.1 CCCH ZF 375 403

Links

Other CCCH ZF,RRM family RBPs
Other Arabidopsis lyrata RBPs

11 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G10320 Arabidopsis thaliana AT1G10320-TAIR-G N 0.974
PK13905.1 Cannabis sativa PK13905.1 N 0.841
Glyma08g17310.1 Glycine max Glyma08g17310.1 N 0.825
Glyma15g39220.1 Glycine max Glyma15g39220.1 N 0.832
MDP0000172441 Malus x domestica MDP0000172441 N 0.867
mgf026159m Mimulus guttatus mgf026159m N 0.842
BGIOSIBCE007424 Oryza indica BGIOSIBCE007424 N 0.858
LOC_Os02g35150 Oryza sativa LOC_Os02g35150 N 0.858
ppa023225m Prunus persica ppa023225m N 0.867
29609.m000599 Ricinus communis 29609.m000599 N 0.868
GSVIVG00023150001 Vitis vinifera GSVIVG00023150001 N 0.832