B9GTF9_POPTR (Populus trichocarpa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		POPTR_0002s22240 T00746_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s22240.1 CCCH ZF 166 188
POPTR_0002s22240.1 RRM 318 378

Links

Other CCCH ZF,RRM family RBPs
Other Populus trichocarpa RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.810
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.747
PK01281.1 Cannabis sativa PK01281.1 N 0.713
PK20504.1 Cannabis sativa PK20504.1 N 0.770
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.701
MDP0000906147 Malus x domestica MDP0000906147 N 0.770
MDP0000214614 Malus x domestica MDP0000214614 N 0.747
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.759
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.828
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.770
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.770
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.874
ppa003564m Prunus persica ppa003564m N 0.747
ppa019338m Prunus persica ppa019338m N 0.782
29223.m000023 Ricinus communis 29223.m000023 N 0.770
27613.m000645 Ricinus communis 27613.m000645 N 0.736
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.747