PTSG_02658 (Salpingoeca rosetta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 PTSG_02658 T01539_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PTSG_02658T0 CCCH ZF 210 236

Links

Other CCCH ZF family RBPs
Other Salpingoeca rosetta RBPs

263 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.926
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.926
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.926
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.889
PK05761.1 Cannabis sativa PK05761.1 N 0.889
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.889
estExt_fgeneshCV_pg.C_10417 Chlorella vulgaris estExt_fgeneshCV_pg.C_10417 N 0.852
estExt_fgenesh1_pm.C_10087 Coccomyxa C 169 estExt_fgenesh1_pm.C_10087 N 0.852
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.889
fgenesh1_pg.C_scaffold_102000045 Daphnia pulex fgenesh1_pg.C_scaffold_102000045 N 0.000
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.889
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.889
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.889
MDP0000202598 Malus x domestica MDP0000202598 N 0.889
MDP0000274000 Malus x domestica MDP0000274000 N 0.889
MDP0000182690 Malus x domestica MDP0000182690 N 0.889
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.889
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.889
mgf009866m Mimulus guttatus mgf009866m N 0.889
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.889
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.889
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.889
ppa009728m Prunus persica ppa009728m N 0.889
PGTG_01325 Puccinia graminis PGTG_01325 N 0.778
PTTG_01394 Puccinia triticina PTTG_01394 N 0.778
29733.m000763 Ricinus communis 29733.m000763 N 0.889
29733.m000748 Ricinus communis 29733.m000748 N 0.889
SB04G009270 Sorghum bicolor Sb04g009270 N 0.889
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.926
GSVIVG00027082001 Vitis vinifera GSVIVG00027082001 N 0.926
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.889