CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
AFLA_080640
(
Aspergillus flavus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CADAFLAG00000846
T02034_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAFLAP00000846
CCCH ZF
43
62
DVPVCKAYSEGHCPLGPACP
CADAFLAP00000846
CCCH ZF
90
112
LVCKHFLKGLCKKGLKCEYLHEY
CADAFLAP00000846
CCCH ZF
115
141
RRMPECQSFSRSGYCPNGDDCLYQHVR
CADAFLAP00000846
CCCH ZF
145
164
RLPPCEHYDRGFCPLGPLCA
CADAFLAP00000846
CCCH ZF
169
191
RRRLCQYYLAGFCPEGKGCADAH
Links
Other
CCCH ZF
family RBPs
Other
Aspergillus flavus
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF17498
Drosophila ananassae
FBgn0094516
N
0.000
GG21761
Drosophila erecta
FBgn0113939
N
0.000
GH17992
Drosophila grimshawi
FBgn0125460
N
0.000
GH22238
Drosophila grimshawi
FBgn0129699
N
0.000
CG12288
Drosophila melanogaster
FBgn0032620
N
0.000
GI10515
Drosophila mojavensis
FBgn0133279
N
0.000
GL23520
Drosophila persimilis
FBgn0161110
N
0.000
GA27287-RA
Drosophila pseudoobscura
FBgn0248655
N
0.000
GM17146
Drosophila sechellia
FBgn0172057
N
0.000
GD21886
Drosophila simulans
FBgn0193303
N
0.000
GJ23196
Drosophila virilis
FBgn0210298
N
0.000
GK12898
Drosophila willistoni
FBgn0214907
N
0.000