CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

RBP Information

ZFP36L2 *(Tetraodon nigroviridis)* CCCH ZF
Pfam ID	Interpro ID	Gene ID	CISBP-RNA ID	Sequence source
PF00642 (zf-CCCH)	IPR000571	ENSTNIG00000017103	T03505_0.6	Ensembl (2011-Oct-26)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
ZFP36 M350_0.6	Homo sapiens		UUAUUUAWW	SELEX Cook et al.(2011) 951_12324455	0.704
ZFP36 M269_0.6	Homo sapiens		UUAUUUAWW	SELEX Cook et al.(2011) 221_12324455	0.704
ZFP36 M268_0.6	Homo sapiens	Sequence logo not available	AUUUA	RIP-chip Cook et al.(2011) 194_18256032.1	0.704
ZFP36 M267_0.6	Homo sapiens	Sequence logo not available	UUAUUUAUU	RIP-chip Cook et al.(2011) 194_18256032	0.704
ZFP36 M266_0.6	Homo sapiens	Sequence logo not available	UUGUGS	RIP-chip Cook et al.(2011) 193_18367721.3	0.704
ZFP36 M265_0.6	Homo sapiens	Sequence logo not available	CUUGU	RIP-chip Cook et al.(2011) 193_18367721.2	0.704
ZFP36 M264_0.6	Homo sapiens	Sequence logo not available	HCYUBY	RIP-chip Cook et al.(2011) 193_18367721.1	0.704
ZFP36 M263_0.6	Homo sapiens	Sequence logo not available	AAUAA	RIP-chip Cook et al.(2011) 193_18367721	0.704
For this family, RBPs with RBD identity > 0.7* will likely have a similar motif*

RNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSTNIP00000020238	CCCH ZF	129	155	YKTELCRPFEENGSCKYGEKCQFAHGY
ENSTNIP00000020238	CCCH ZF	167	193	YKTEPCRTFHTIGFCPYGPRCHFIHNA

Links
Other CCCH ZF family RBPs
Other *Tetraodon nigroviridis* RBPs

156 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name	Species	Gene ID	Motif Evidence	RBD Identity	Action
Ame_R003219	Ailuropoda melanoleuca	Ame_R003219	N	0.000
TIAL1	Echinops telfairi	ENSETEG00000020276	N	0.000
TIAL1	Erinaceus europaeus	ENSEEUG00000011861	N	0.000
TIAL1	Loxodonta africana	ENSLAFG00000003412	N	0.000
TIAL1	Meleagris gallopavo	ENSMGAG00000011368	N	0.000
TIAL1	Monodelphis domestica	ENSMODG00000008865	I	0.000
TIA1	Monodelphis domestica	ENSMODG00000011515	I	0.000
TIAL1	Myotis lucifugus	ENSMLUG00000004645	N	0.000
TIAL1	Oryctolagus cuniculus	ENSOCUG00000003783	I	0.000
TIAL1	Otolemur garnettii	ENSOGAG00000011417	N	0.000
TIAL1	Sorex araneus	ENSSARG00000012980	N	0.000
TIAL1	Taeniopygia guttata	ENSTGUG00000011148	N	0.000
TIAL1	Takifugu rubripes	ENSTRUG00000017931	I	0.000
CAC95017	Xenopus laevis	CAC95017	N	0.000
tial1	Xenopus tropicalis	ENSXETG00000010234	N	0.000