PASA_GEN_19100012 (Daphnia pulex)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 PASA_GEN_19100012 T05659_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PASA_GEN_19100012 CCCH ZF 178 204

Links

Other CCCH ZF family RBPs
Other Daphnia pulex RBPs

254 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.889
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.889
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.889
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.852
PK05761.1 Cannabis sativa PK05761.1 N 0.852
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.815
estExt_fgeneshCV_pg.C_10417 Chlorella vulgaris estExt_fgeneshCV_pg.C_10417 N 0.852
estExt_fgenesh1_pm.C_10087 Coccomyxa C 169 estExt_fgenesh1_pm.C_10087 N 0.852
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.815
fgenesh1_pg.C_scaffold_102000045 Daphnia pulex fgenesh1_pg.C_scaffold_102000045 N 0.000
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.852
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.852
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.852
MDP0000202598 Malus x domestica MDP0000202598 N 0.852
MDP0000274000 Malus x domestica MDP0000274000 N 0.852
MDP0000182690 Malus x domestica MDP0000182690 N 0.852
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.852
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.852
mgf009866m Mimulus guttatus mgf009866m N 0.852
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.852
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.852
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.852
ppa009728m Prunus persica ppa009728m N 0.852
PGTG_01325 Puccinia graminis PGTG_01325 N 0.704
PTTG_01394 Puccinia triticina PTTG_01394 N 0.704
29733.m000763 Ricinus communis 29733.m000763 N 0.852
29733.m000748 Ricinus communis 29733.m000748 N 0.852
SB04G009270 Sorghum bicolor Sb04g009270 N 0.852
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.852
GSVIVG00027082001 Vitis vinifera GSVIVG00027082001 N 0.852
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.852