chr4.LjT10E08.110.nc (Lotus japonicus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 chr4.LjT10E08.110.nc T06004_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr4.LjT10E08.110.nc CCCH ZF 99 124
chr4.LjT10E08.110.nc CCCH ZF 173 199
chr4.LjT10E08.110.nc CCCH ZF 262 288

Links

Other CCCH ZF family RBPs
Other Lotus japonicus RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002890939.1 Arabidopsis lyrata scaffold_103602.1 N 0.912
AT1G32360 Arabidopsis thaliana AT1G32360-TAIR-G N 0.912
BRADI3G16360 Brachypodium distachyon BRADI3G16360 N 0.950
BRADI3G16377 Brachypodium distachyon BRADI3G16377 N 0.950
PK04103.1 Cannabis sativa PK04103.1 N 0.938
Cucsa.312990 Cucumis sativus Cucsa.312990 N 0.975
Glyma01g10610.1 Glycine max Glyma01g10610.1 N 0.988
MDP0000209929 Malus x domestica MDP0000209929 N 0.938
MDP0000706016 Malus x domestica MDP0000706016 N 0.950
cassava5467.m1 Manihot esculenta cassava5467.m1 N 0.950
cassava25690.m1 Manihot esculenta cassava25690.m1 N 0.963
Medtr8g078060 Medicago truncatula Medtr8g078060 N 0.963
mgf004101m Mimulus guttatus mgf004101m N 0.900
mgf003951m Mimulus guttatus mgf003951m N 0.900
mgf012162m Mimulus guttatus mgf012162m N 0.925
BGIOSIBCE026569 Oryza indica BGIOSIBCE026569 N 0.938
LOC_Os08g06330 Oryza sativa LOC_Os08g06330 N 0.938
B9GZ92_POPTR Populus trichocarpa POPTR_0003s09240 N 0.950
B9MU37_POPTR Populus trichocarpa POPTR_0001s02330 N 0.938
ppa008182m Prunus persica ppa008182m N 0.950
30054.m000804 Ricinus communis 30054.m000804 N 0.963
gw1.11.272.1 Selaginella moellendorfii gw1.11.272.1 N 0.700
GSVIVG00013136001 Vitis vinifera GSVIVG00013136001 N 0.938