ppa008182m (Prunus persica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ppa008182m T06528_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa008182m CCCH ZF 92 117
ppa008182m CCCH ZF 165 191
ppa008182m CCCH ZF 222 248

Links

Other CCCH ZF family RBPs
Other Prunus persica RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002890939.1 Arabidopsis lyrata scaffold_103602.1 N 0.887
AT1G32360 Arabidopsis thaliana AT1G32360-TAIR-G N 0.887
BRADI3G16360 Brachypodium distachyon BRADI3G16360 N 0.938
BRADI3G16377 Brachypodium distachyon BRADI3G16377 N 0.938
PK04103.1 Cannabis sativa PK04103.1 N 0.950
Cucsa.312990 Cucumis sativus Cucsa.312990 N 0.950
Glyma01g10610.1 Glycine max Glyma01g10610.1 N 0.938
chr4.LjT10E08.110.nc Lotus japonicus chr4.LjT10E08.110.nc N 0.950
MDP0000209929 Malus x domestica MDP0000209929 N 0.988
MDP0000706016 Malus x domestica MDP0000706016 N 1.000
cassava25690.m1 Manihot esculenta cassava25690.m1 N 0.963
cassava5467.m1 Manihot esculenta cassava5467.m1 N 0.950
Medtr8g078060 Medicago truncatula Medtr8g078060 N 0.912
mgf012162m Mimulus guttatus mgf012162m N 0.900
mgf004101m Mimulus guttatus mgf004101m N 0.887
mgf003951m Mimulus guttatus mgf003951m N 0.887
BGIOSIBCE026569 Oryza indica BGIOSIBCE026569 N 0.925
LOC_Os08g06330 Oryza sativa LOC_Os08g06330 N 0.925
B9MU37_POPTR Populus trichocarpa POPTR_0001s02330 N 0.963
B9GZ92_POPTR Populus trichocarpa POPTR_0003s09240 N 0.975
30054.m000804 Ricinus communis 30054.m000804 N 0.963
gw1.11.272.1 Selaginella moellendorfii gw1.11.272.1 N 0.700
GSVIVG00013136001 Vitis vinifera GSVIVG00013136001 N 0.975