LIN28A (Danio rerio)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSDARG00000004328 T06775_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.853
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.853
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000015591 CSD 31 103
ENSDARP00000015591 CCHC ZF 128 145
ENSDARP00000015591 CCHC ZF 150 167

Links

Other CCHC ZF,CSD family RBPs
Other Danio rerio RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ADR183C Ashbya gossypii ADR183C N 0.000
CAGL0H04763g Candida glabrata CAGL0H04763g I 0.000
KLTH0G04114g Kluyveromyces thermotolerans KLTH0G04114g I 0.000
Kwal_18572 Kluyveromyces waltii Kwal_18572 I 0.000
SAKL0G05258g Lachancea kluyveri SAKL0G05258g I 0.000
5461_YDR432W Saccharomyces bayanus 5461_YDR432W I 0.000
Scas_Contig717.41 Saccharomyces castellii Scas_Contig717.41 I 0.000
Npl3 Saccharomyces cerevisiae YDR432W D 0.000
5166_YDR432W Saccharomyces mikatae 5166_YDR432W I 0.000
5654_YDR432W Saccharomyces paradoxus 5654_YDR432W I 0.000
A7TFW1_VANPO Vanderwaltozyma polyspora A7TFW1_VANPO I 0.000
ZYRO0D12892g Zygosaccharomyces rouxii ZYRO0D12892g I 0.000