A7TFW1_VANPO (Vanderwaltozyma polyspora)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 A7TFW1_VANPO T55336_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Npl3
M278_0.6 		Saccharomyces cerevisiae Sequence logo not available ACAUACA RIP-chip
Cook et al.(2011)
252_15703440.1 		0.870
Npl3
M277_0.6 		Saccharomyces cerevisiae Sequence logo not available UAUAUAA RIP-chip
Cook et al.(2011)
252_15703440 		0.870
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
A7TFW1 RRM 119 181
A7TFW1 RRM 194 261

Links

Other RRM family RBPs
Other Vanderwaltozyma polyspora RBPs

11 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CAGL0H04763g Candida glabrata CAGL0H04763g I 0.893
SAKL0G05258g Lachancea kluyveri SAKL0G05258g I 0.878
5166_YDR432W Saccharomyces mikatae 5166_YDR432W I 0.878
Npl3 Saccharomyces cerevisiae YDR432W D 0.870
5461_YDR432W Saccharomyces bayanus 5461_YDR432W I 0.863
5654_YDR432W Saccharomyces paradoxus 5654_YDR432W I 0.863
ZYRO0D12892g Zygosaccharomyces rouxii ZYRO0D12892g I 0.855
Scas_Contig717.41 Saccharomyces castellii Scas_Contig717.41 I 0.847
KLTH0G04114g Kluyveromyces thermotolerans KLTH0G04114g I 0.840
Kwal_18572 Kluyveromyces waltii Kwal_18572 I 0.840
KLLA0B00979g Kluyveromyces lactis KLLA0B00979g I 0.733