Scas_Contig717.41 (Saccharomyces castellii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Scas_Contig717.41 T54915_0.6 SGD (2003-Oct-3)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Npl3
M278_0.6 		Saccharomyces cerevisiae Sequence logo not available ACAUACA RIP-chip
Cook et al.(2011)
252_15703440.1 		0.870
Npl3
M277_0.6 		Saccharomyces cerevisiae Sequence logo not available UAUAUAA RIP-chip
Cook et al.(2011)
252_15703440 		0.870
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig717.41 RRM 85 147
Scas_Contig717.41 RRM 160 227

Links

Other RRM family RBPs
Other Saccharomyces castellii RBPs

11 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ZYRO0D12892g Zygosaccharomyces rouxii ZYRO0D12892g I 0.916
5166_YDR432W Saccharomyces mikatae 5166_YDR432W I 0.878
5654_YDR432W Saccharomyces paradoxus 5654_YDR432W I 0.878
5461_YDR432W Saccharomyces bayanus 5461_YDR432W I 0.870
Npl3 Saccharomyces cerevisiae YDR432W D 0.870
Kwal_18572 Kluyveromyces waltii Kwal_18572 I 0.863
CAGL0H04763g Candida glabrata CAGL0H04763g I 0.863
KLTH0G04114g Kluyveromyces thermotolerans KLTH0G04114g I 0.855
SAKL0G05258g Lachancea kluyveri SAKL0G05258g I 0.855
A7TFW1_VANPO Vanderwaltozyma polyspora A7TFW1_VANPO I 0.847
KLLA0B00979g Kluyveromyces lactis KLLA0B00979g I 0.740