5654_YDR432W (Saccharomyces paradoxus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 5654_YDR432W T55290_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Npl3
M278_0.6 		Saccharomyces cerevisiae Sequence logo not available ACAUACA RIP-chip
Cook et al.(2011)
252_15703440.1 		0.977
Npl3
M277_0.6 		Saccharomyces cerevisiae Sequence logo not available UAUAUAA RIP-chip
Cook et al.(2011)
252_15703440 		0.977
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
5654_YDR432W RRM 131 193
5654_YDR432W RRM 206 273

Links

Other RRM family RBPs
Other Saccharomyces paradoxus RBPs

11 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
5166_YDR432W Saccharomyces mikatae 5166_YDR432W I 0.985
Npl3 Saccharomyces cerevisiae YDR432W D 0.977
5461_YDR432W Saccharomyces bayanus 5461_YDR432W I 0.969
ZYRO0D12892g Zygosaccharomyces rouxii ZYRO0D12892g I 0.893
CAGL0H04763g Candida glabrata CAGL0H04763g I 0.885
Scas_Contig717.41 Saccharomyces castellii Scas_Contig717.41 I 0.878
Kwal_18572 Kluyveromyces waltii Kwal_18572 I 0.870
KLTH0G04114g Kluyveromyces thermotolerans KLTH0G04114g I 0.870
A7TFW1_VANPO Vanderwaltozyma polyspora A7TFW1_VANPO I 0.863
SAKL0G05258g Lachancea kluyveri SAKL0G05258g I 0.855
KLLA0B00979g Kluyveromyces lactis KLLA0B00979g I 0.748