LIN28B (Tetraodon nigroviridis)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSTNIG00000012302 T06838_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.817
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.817
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000015270 CSD 31 103
ENSTNIP00000015270 CCHC ZF 129 145
ENSTNIP00000015270 CCHC ZF 151 168

Links

Other CCHC ZF,CSD family RBPs
Other Tetraodon nigroviridis RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gwH.33.76.1 Chlamydomonas reinhardtii gwH.33.76.1 N 0.000
estExt_fgenesh3_pm.C_240021 Chlorella NC64A estExt_fgenesh3_pm.C_240021 N 0.000
estExt_fgeneshCV_pg.C_40316 Chlorella vulgaris estExt_fgeneshCV_pg.C_40316 N 0.000
e_gw1.4.423.1 Coccomyxa C 169 e_gw1.4.423.1 N 0.000
PPIL4 Gasterosteus aculeatus ENSGACG00000006639 N 0.000
PPIL4 Oryzias latipes ENSORLG00000015310 N 0.000
PPIL4 Takifugu rubripes ENSTRUG00000006670 N 0.000