CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gwH.33.76.1
(
Chlamydomonas reinhardtii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gwH.33.76.1
T53482_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gwH.33.76.1
RRM
241
311
LFICKLNPVTSEEDLEIIFSRFGHVTSCDIIRDFKTGDSLNYGFIGFDSDEACEAAYFKMNNAVIDDRRVR
Links
Other
RRM
family RBPs
Other
Chlamydomonas reinhardtii
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.69.44.1
Volvox carteri
e_gw1.69.44.1
N
0.972
estExt_fgenesh3_pm.C_240021
Chlorella NC64A
estExt_fgenesh3_pm.C_240021
N
0.845
estExt_fgeneshCV_pg.C_40316
Chlorella vulgaris
estExt_fgeneshCV_pg.C_40316
N
0.817
e_gw1.4.423.1
Coccomyxa C 169
e_gw1.4.423.1
N
0.817
gw1.12.00.150.1
Ostreococcus tauri
gw1.12.00.150.1
N
0.704
PPIL4
Gasterosteus aculeatus
ENSGACG00000006639
N
0.704