LIN28B (Tetraodon nigroviridis)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSTNIG00000012302 T06838_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.817
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.817
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000015270 CSD 31 103
ENSTNIP00000015270 CCHC ZF 129 145
ENSTNIP00000015270 CCHC ZF 151 168

Links

Other CCHC ZF,CSD family RBPs
Other Tetraodon nigroviridis RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.972
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.963
LIN28B Oryzias latipes ENSORLG00000012891 I 0.954
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.862
LIN28B Echinops telfairi ENSETEG00000015340 I 0.862
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.862
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.862
LIN28B Microcebus murinus ENSMICG00000002297 I 0.862
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.855
LOC100400137 Callithrix jacchus ENSCJAG00000001671 I 0.853
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.853
LIN28B Homo sapiens ENSG00000187772 I 0.853
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.853
ENSPPYG00000016875 Pongo pygmaeus ENSPPYG00000016875 I 0.853
LOC100066260 Equus caballus ENSECAG00000020994 I 0.853
LIN28B Tarsius syrichta ENSTSYG00000006480 I 0.853
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.853
Ame_R004947 Ailuropoda melanoleuca Ame_R004947 I 0.853
AAH42225 Xenopus laevis AAH42225 I 0.852
Q8AVK2 Xenopus laevis Q8AVK2 I 0.852
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.844
LIN28B Sorex araneus ENSSARG00000008374 I 0.844
Lin28b Mus musculus ENSMUSG00000063804 I 0.844
LIN28B Canis familiaris ENSCAFG00000003598 I 0.844
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.844
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.844
LN28B_CHICK Gallus gallus ENSGALG00000015411 I 0.843
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.835
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.835
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.833
LIN28A Takifugu rubripes ENSTRUG00000006069 I 0.826
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.826
LIN28A Myotis lucifugus ENSMLUG00000010158 I 0.817
LIN28A Canis familiaris ENSCAFG00000012488 I 0.817
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.817
LIN28A Macropus eugenii ENSMEUG00000008743 I 0.817
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.817
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.817
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.817
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.817
LOC100405014 Callithrix jacchus ENSCJAG00000009796 I 0.817
Lin28a Mus musculus ENSMUSG00000050966 I 0.817
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.817
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.817
Ame_R001082 Ailuropoda melanoleuca Ame_R001082 I 0.817
LIN28A Bos taurus ENSBTAG00000040497 I 0.817
LIN28A Homo sapiens ENSG00000131914 D 0.817
LIN28A Felis catus ENSFCAG00000012810 I 0.817
Lin28 Rattus norvegicus ENSRNOG00000015384 I 0.817
ENSPPYG00000001684 Pongo pygmaeus ENSPPYG00000001684 I 0.817
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.817
LIN28A Sus scrofa ENSSSCG00000003557 I 0.817
LIN28 Equus caballus ENSECAG00000020267 I 0.817
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.809
LN28A_CHICK Gallus gallus ENSGALG00000000388 I 0.809
XR_023903.1 Pan troglodytes ENSPTRG00000000384 I 0.807
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.807
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.807
LIN28A Oryzias latipes ENSORLG00000014369 I 0.800
LIN28A Gasterosteus aculeatus ENSGACG00000013893 I 0.800
lin28a Xenopus tropicalis ENSXETG00000012324 I 0.800
lin28a Danio rerio ENSDARG00000016999 I 0.798
AAM77750 Xenopus laevis AAM77750 I 0.791
AAI69597 Xenopus laevis AAI69597 I 0.791
Q8JHC4 Xenopus laevis Q8JHC4 I 0.791
AAI69625 Xenopus laevis AAI69625 I 0.791
LIN28A Danio rerio ENSDARG00000004328 I 0.780
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.780
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.780
LIN28A Procavia capensis ENSPCAG00000013674 I 0.771
LIN28A Gasterosteus aculeatus ENSGACG00000007826 I 0.771
LIN28A Takifugu rubripes ENSTRUG00000009454 I 0.761
LIN28A Tetraodon nigroviridis ENSTNIG00000009802 I 0.734
LOC100406610 Callithrix jacchus ENSCJAG00000021979 I 0.727