estExt_fgenesh3_pm.C_240021 (Chlorella NC64A)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh3_pm.C_240021 T51011_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh3_pm.C_240021 RRM 241 311

Links

Other RRM family RBPs
Other Chlorella NC64A RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.4.423.1 Coccomyxa C 169 e_gw1.4.423.1 N 0.873
estExt_fgeneshCV_pg.C_40316 Chlorella vulgaris estExt_fgeneshCV_pg.C_40316 N 0.873
e_gw1.69.44.1 Volvox carteri e_gw1.69.44.1 N 0.859
gwH.33.76.1 Chlamydomonas reinhardtii gwH.33.76.1 N 0.845
PPIL4 Gasterosteus aculeatus ENSGACG00000006639 N 0.803
ppil4 Danio rerio ENSDARG00000043854 N 0.775
PPIL4 Taeniopygia guttata ENSTGUG00000010655 N 0.775
PPIL4 Takifugu rubripes ENSTRUG00000006670 N 0.775
ENSOANG00000001063 Ornithorhynchus anatinus ENSOANG00000001063 N 0.775
PPIL4 Meleagris gallopavo ENSMGAG00000012596 N 0.775
PPIL4 Gallus gallus ENSGALG00000012364 N 0.775
PPIL4 Oryzias latipes ENSORLG00000015310 N 0.775
ppil4 Xenopus tropicalis ENSXETG00000021385 N 0.775
PPIL4 Myotis lucifugus ENSMLUG00000002766 N 0.761
PPIL4 Microcebus murinus ENSMICG00000006287 N 0.761
PPIL4 Macaca mulatta ENSMMUG00000023067 N 0.761
Ppil4 Mus musculus ENSMUSG00000015757 N 0.761
PPIL4 Oryctolagus cuniculus ENSOCUG00000007696 N 0.761
e_gw.42.57.1 Nematostella vectensis e_gw.42.57.1 N 0.761
PPIL4 Vicugna pacos ENSVPAG00000005157 N 0.761
PPIL4 Gorilla gorilla ENSGGOG00000009686 N 0.761
Q6JDI1_CANFA Canis familiaris ENSCAFG00000000379 N 0.761
PPIL4 Anolis carolinensis ENSACAG00000006936 N 0.761
PPIL4 Cavia porcellus ENSCPOG00000014614 N 0.761
PPIL4 Equus caballus ENSECAG00000021819 N 0.761
PPIL4 Otolemur garnettii ENSOGAG00000014153 N 0.761
PPIL4 Homo sapiens ENSG00000131013 N 0.761
PPIL4 Loxodonta africana ENSLAFG00000026804 N 0.761
PPIL4 Monodelphis domestica ENSMODG00000016825 N 0.761
PPIL4 Sorex araneus ENSSARG00000011244 N 0.761
Ame_R008665 Ailuropoda melanoleuca Ame_R008665 N 0.761
PPIL4 Ochotona princeps ENSOPRG00000005619 N 0.761
PPIL4 Tetraodon nigroviridis ENSTNIG00000002706 N 0.761
PPIL4 Pteropus vampyrus ENSPVAG00000000746 N 0.761
Ppil4 Rattus norvegicus ENSRNOG00000015552 N 0.761
PPIL4 Tursiops truncatus ENSTTRG00000006014 N 0.761
A6QP53_BOVIN Bos taurus ENSBTAG00000016980 N 0.761
PPIL4 Procavia capensis ENSPCAG00000008203 N 0.761
PPIL4 Pan troglodytes ENSPTRG00000018692 N 0.761
ENSCSAVG00000010619 Ciona savignyi ENSCSAVG00000010619 N 0.746
CRE29496 Caenorhabditis remanei CRE29496 N 0.746
CBN08292 Caenorhabditis brenneri CBN08292 N 0.746
PPIL4 Erinaceus europaeus ENSEEUG00000000959 N 0.746
SPPG_03169 Spizellomyces punctatus SPPG_03169 N 0.746
LOAG_08216 Loa loa LOAG_08216 N 0.746
fgenesh1_pm.C_scaffold_1000049 Schizophyllum commune fgenesh1_pm.C_scaffold_1000049 N 0.746
fgeneshTA2_pg.C_scaffold_8000290 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000290 N 0.746
PPIL4 Spermophilus tridecemlineatus ENSSTOG00000013980 N 0.732
e_gww1.4.788.1 Laccaria bicolor e_gww1.4.788.1 N 0.732
sig-7 Caenorhabditis elegans F39H2.2 N 0.732
estExt_fgenesh3_pg.C_910016 Postia placenta estExt_fgenesh3_pg.C_910016 N 0.732
e_gww2.22.65.1 Phanerochaete chrysosporium e_gww2.22.65.1 N 0.732
83285 Helobdella robusta 83285 N 0.732
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.732
TA03990 Theileria annulata TA03990 N 0.732
XP_001180629.1 Strongylocentrotus purpuratus XP_001180629.1 N 0.732
XP_001192414.1 Strongylocentrotus purpuratus XP_001192414.1 N 0.732
XP_782627.2 Strongylocentrotus purpuratus XP_782627.2 N 0.732
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA Heterobasidion annosum fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA N 0.732
estExt_Genewise1Plus.C_11662 Tremella mesenterica estExt_Genewise1Plus.C_11662 N 0.732
gw1.13.70.1 Lottia gigantea gw1.13.70.1 N 0.732
BGIBMGA008977 Bombyx mori BGIBMGA008977 N 0.732
estExt_fgenesh2_kg.C_140159 Agaricus bisporus estExt_fgenesh2_kg.C_140159 N 0.732
SJAG_00470 Schizosaccharomyces japonicus SJAG_00470 N 0.732
XP_787384.2 Strongylocentrotus purpuratus XP_787384.2 N 0.732
estExt_Genewise1Plus.C_40228 Batrachochytrium dendrobatidis estExt_Genewise1Plus.C_40228 N 0.732
CBG12494 Caenorhabditis briggsae CBG12494 N 0.732
PPIL4 Callithrix jacchus ENSCJAG00000019613 N 0.722
estExt_Genewise1Plus.C_12820 Neurospora discreta estExt_Genewise1Plus.C_12820 N 0.718
CJA06296 Caenorhabditis japonica CJA06296 N 0.718
gw1.1.256.1 Neurospora tetrasperma gw1.1.256.1 N 0.718
GK13166 Drosophila willistoni FBgn0215175 N 0.718
NCU10166 Neurospora crassa NCU10166 N 0.718
e_gw1.4.2113.1 Pleurotus ostreatus e_gw1.4.2113.1 N 0.718
cyp6 Schizosaccharomyces pombe SPBC17G9.05 N 0.718
59089 Aureococcus anophagefferens 59089 N 0.718
SPOG_01415 Schizosaccharomyces cryophilus SPOG_01415 N 0.718
gwEuk.12.143.1 Ostreococcus lucimarinus gwEuk.12.143.1 N 0.718
Pa_2_13850 Podospora anserina Pa_2_13850 N 0.718
Aqu1.223583 Amphimedon queenslandica Aqu1.223583 N 0.718
e_gw1.20.215.1 Phycomyces blakesleeanus e_gw1.20.215.1 N 0.718
e_gw1.6.1078.1 Selaginella moellendorfii e_gw1.6.1078.1 N 0.718
VDAG_02606 Verticillium dahliae VDAG_02606 N 0.718
BC1G_10007 Botrytis cinerea BC1G_10007 N 0.718
CAOG_07850 Capsaspora owczarzaki CAOG_07850 N 0.718
WUBG_04730 Wuchereria bancrofti WUBG_04730 N 0.718
TP03_0334 Theileria parva TP03_0334 N 0.718
EuGene.1200010297 Ostreococcus RCC809 EuGene.1200010297 N 0.704
GA26948-RA Drosophila pseudoobscura FBgn0248319 N 0.704
estExt_Genewise1.C_30053 Myceliophthora thermophila estExt_Genewise1.C_30053 N 0.704
e_gw1.4.370.1 Sporobolomyces roseus e_gw1.4.370.1 N 0.704
estExt_Genewise1Plus.C_chr_40303 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_40303 N 0.704
e_gw1.6.80.1 Monosiga brevicollis e_gw1.6.80.1 N 0.704
GJ23668 Drosophila virilis FBgn0210765 N 0.704
estExt_Genewise1Plus.C_61472 Cryphonectria parasitica estExt_Genewise1Plus.C_61472 N 0.704
amel4_ncbi_hmm11961 Apis mellifera amel4_ncbi_hmm11961 N 0.704
VDBG_02138 Verticillium albo atrum VDBG_02138 N 0.704
FVEG_11166 Fusarium verticillioides FVEG_11166 N 0.704
amel4_ncbi_hmm35613 Apis mellifera amel4_ncbi_hmm35613 N 0.704
AGAP008136 Anopheles gambiae AGAP008136 N 0.704
estExt_Genewise1.C_180101 Capitella teleta estExt_Genewise1.C_180101 N 0.704
ANIA_09095 Aspergillus nidulans CADANIAG00009519 N 0.704
FOXG_13736 Fusarium oxysporum FOXG_13736 N 0.704
CNBG_1409 Cryptococcus neoformans CNBG_1409 N 0.704
GF18772 Drosophila ananassae FBgn0095789 N 0.704
GH18460 Drosophila grimshawi FBgn0125927 N 0.704
GI24038 Drosophila mojavensis FBgn0146761 N 0.704
PredSwiss_ASS2010_933.2 Pneumocystis carinii PredSwiss_ASS2010_933.2 N 0.704
PredSwiss_CON599.3 Pneumocystis carinii PredSwiss_CON599.3 N 0.704
CHGG_06839 Chaetomium globosum CHGG_06839 N 0.704
fgenesh2_pm.4_#_1016 Serpula lacrymans fgenesh2_pm.4_#_1016 N 0.704
GL13859 Drosophila persimilis FBgn0151464 N 0.704