ENSDARG00000054296 (Danio rerio)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSDARG00000054296 T07226_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF7
M353_0.6 		Homo sapiens ACGAGAGAY SELEX
Cook et al.(2011)
954_10094314 		0.940
SRSF7
M331_0.6 		Homo sapiens AGACKACGAY SELEX
Cook et al.(2011)
790_10094314 		0.940
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000070952 RRM 13 78
ENSDARP00000070952 CCHC ZF 104 121
ENSDARP00000101099 RRM 13 78
ENSDARP00000101099 CCHC ZF 104 121

Links

Other CCHC ZF,RRM family RBPs
Other Danio rerio RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GLRG_05733 Colletotrichum graminicola GLRG_05733 N 0.000
FOXG_08275 Fusarium oxysporum FOXG_08275 N 0.000
fgenesh1_pg.C_scaffold_2000270 Trichoderma atroviride fgenesh1_pg.C_scaffold_2000270 N 0.000
e_gw1.2.858.1 Trichoderma reesei e_gw1.2.858.1 N 0.000
gw1.1.1031.1 Trichoderma virens gw1.1.1031.1 N 0.000
VDBG_08298 Verticillium albo atrum VDBG_08298 N 0.000