ENSDARG00000054296 (Danio rerio)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSDARG00000054296 T07226_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF7
M353_0.6 		Homo sapiens ACGAGAGAY SELEX
Cook et al.(2011)
954_10094314 		0.940
SRSF7
M331_0.6 		Homo sapiens AGACKACGAY SELEX
Cook et al.(2011)
790_10094314 		0.940
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000070952 RRM 13 78
ENSDARP00000070952 CCHC ZF 104 121
ENSDARP00000101099 RRM 13 78
ENSDARP00000101099 CCHC ZF 104 121

Links

Other CCHC ZF,RRM family RBPs
Other Danio rerio RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF7 Macaca mulatta ENSMMUG00000011025 I 0.952
ENSMODG00000008669 Monodelphis domestica ENSMODG00000008669 I 0.952
SRSF7 Pan troglodytes ENSPTRG00000011851 I 0.952
SRSF7 Ornithorhynchus anatinus ENSOANG00000004405 I 0.952
Ame_R012465 Ailuropoda melanoleuca Ame_R012465 I 0.952
SRSF7 Loxodonta africana ENSLAFG00000005666 I 0.952
LOC100385878 Callithrix jacchus ENSCJAG00000015185 I 0.952
SRSF7 Homo sapiens ENSG00000115875 D 0.952
ENSCAFG00000006272 Canis familiaris ENSCAFG00000006272 I 0.940
ENSPPYG00000012480 Pongo pygmaeus ENSPPYG00000012480 I 0.940
SRSF7 Procavia capensis ENSPCAG00000011348 I 0.940
SRSF7 Cavia porcellus ENSCPOG00000011785 I 0.940
SFRS7_BOVIN Bos taurus ENSBTAG00000014891 I 0.940
Sfrs7 Rattus norvegicus ENSRNOG00000027360 I 0.940
SRSF7 Tarsius syrichta ENSTSYG00000012273 I 0.940
SRSF7 Vicugna pacos ENSVPAG00000003316 I 0.940
SRSF7 Ochotona princeps ENSOPRG00000010234 I 0.940
SRSF7 Tupaia belangeri ENSTBEG00000004604 I 0.940
SRSF7 Anolis carolinensis ENSACAG00000006082 I 0.940
SRSF7 Pteropus vampyrus ENSPVAG00000012076 I 0.940
SRSF7 Sus scrofa ENSSSCG00000008484 I 0.940
SRSF7 Otolemur garnettii ENSOGAG00000010169 I 0.940
SRSF7 Meleagris gallopavo ENSMGAG00000007415 I 0.940
ENSMEUG00000016459 Macropus eugenii ENSMEUG00000016459 I 0.940
LOC100054033 Equus caballus ENSECAG00000008664 I 0.940
SRSF7 Gorilla gorilla ENSGGOG00000014620 I 0.940
SRSF7 Erinaceus europaeus ENSEEUG00000014487 I 0.940
SRSF7 Dasypus novemcinctus ENSDNOG00000007821 I 0.940
SRSF7 Myotis lucifugus ENSMLUG00000015692 I 0.940
Srsf7 Mus musculus ENSMUSG00000024097 I 0.940
SRSF7 Oryctolagus cuniculus ENSOCUG00000004087 I 0.940
Srsf7 Dipodomys ordii ENSDORG00000008616 I 0.940
AAH77185 Xenopus laevis AAH77185 I 0.929
srsf7 Xenopus tropicalis ENSXETG00000025300 I 0.929
AAH77393 Xenopus laevis AAH77393 I 0.929
SFRS7 Taeniopygia guttata ENSTGUG00000002080 I 0.917
B5FZ53_TAEGU Taeniopygia guttata ENSTGUG00000002095 I 0.917
ENSMODG00000023693 Monodelphis domestica ENSMODG00000023693 I 0.917
Q5ZMI0_CHICK Gallus gallus ENSGALG00000013819 I 0.917
ENSMEUG00000000773 Macropus eugenii ENSMEUG00000000773 I 0.917
ENSRNOG00000025091 Rattus norvegicus ENSRNOG00000025091 I 0.905
SRSF7 Tursiops truncatus ENSTTRG00000014324 I 0.869
ENSRNOG00000033319 Rattus norvegicus ENSRNOG00000033319 I 0.845
ENSCHOG00000002390 Choloepus hoffmanni ENSCHOG00000002390 I 0.845
ENSGALG00000013825 Gallus gallus ENSGALG00000013825 I 0.833
SRSF7 Takifugu rubripes ENSTRUG00000010529 I 0.810
SRSF7 Oryzias latipes ENSORLG00000000746 I 0.810
SRSF7 Tetraodon nigroviridis ENSTNIG00000014279 I 0.810
SRSF7 Gasterosteus aculeatus ENSGACG00000012311 I 0.810
SRSF7 Danio rerio ENSDARG00000035325 I 0.810
PHUM241330 Pediculus humanus PHUM241330 I 0.774
amel4_ncbi_hmm42637 Apis mellifera amel4_ncbi_hmm42637 I 0.750
BGIBMGA010396 Bombyx mori BGIBMGA010396 I 0.750
estExt_Genewise1.C_1590063 Capitella teleta estExt_Genewise1.C_1590063 I 0.750
CPIJ013237 Culex quinquefasciatus CPIJ013237 I 0.750
CpipJ_CPIJ013237 Culex pipiens CpipJ_CPIJ013237 I 0.750
AAEL017082 Aedes aegypti AAEL017082 I 0.750
PHUM284060 Pediculus humanus PHUM284060 I 0.738
ISCW006562 Ixodes scapularis ISCW006562 I 0.726
DGIL_AUG5s7527g2t1 Acyrtosiphon pisum DGIL_AUG5s7527g2t1 I 0.726
AGAP008303 Anopheles gambiae AGAP008303 I 0.714
XP_001178647.1 Strongylocentrotus purpuratus XP_001178647.1 N 0.702
XP_789661.1 Strongylocentrotus purpuratus XP_789661.1 N 0.702