CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DDX41
(
Gasterosteus aculeatus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSGACG00000018334
T10212_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000024240
CCHC ZF
574
591
RGCTFCGGLGHRITDCPK
Links
Other
CCHC ZF
family RBPs
Other
Gasterosteus aculeatus
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R015210
Ailuropoda melanoleuca
Ame_R015210
I
0.000
Ame_R011562
Ailuropoda melanoleuca
Ame_R011562
I
0.000
ESRP1
Anolis carolinensis
ENSACAG00000003748
I
0.000
ESRP2
Anolis carolinensis
ENSACAG00000009900
I
0.000
LOC788414
Bos taurus
ENSBTAG00000021838
I
0.000
ESRP2
Bos taurus
ENSBTAG00000004375
I
0.000
estExt_gwp.C_3900052
Branchiostoma floridae
estExt_gwp.C_3900052
N
0.000
estExt_gwp.C_3900044
Branchiostoma floridae
estExt_gwp.C_3900044
N
0.000
LOC100388530
Callithrix jacchus
ENSCJAG00000015709
I
0.000
LOC100386717
Callithrix jacchus
ENSCJAG00000000043
I
0.000
ESRP2
Canis familiaris
ENSCAFG00000020320
I
0.000
ESRP1
Canis familiaris
ENSCAFG00000009305
I
0.000
ESRP1
Cavia porcellus
ENSCPOG00000012197
I
0.000
esrp2
Danio rerio
ENSDARG00000018814
I
0.000
esrp1
Danio rerio
ENSDARG00000011245
I
0.000
ESRP2
Dasypus novemcinctus
ENSDNOG00000018588
I
0.000
Esrp1
Dipodomys ordii
ENSDORG00000011987
N
0.000
Esrp2
Dipodomys ordii
ENSDORG00000000665
I
0.000
ESRP2
Echinops telfairi
ENSETEG00000006068
I
0.000
ESRP1
Equus caballus
ENSECAG00000000784
I
0.000
LOC100066567
Equus caballus
ENSECAG00000017375
I
0.000
ESRP2
Erinaceus europaeus
ENSEEUG00000014033
I
0.000
ESRP1
Erinaceus europaeus
ENSEEUG00000001673
I
0.000
ESRP1
Felis catus
ENSFCAG00000009920
I
0.000
ESRP2
Felis catus
ENSFCAG00000010419
I
0.000
ESRP2_CHICK
Gallus gallus
ENSGALG00000003374
I
0.000
RBM35A
Gallus gallus
ENSGALG00000015968
I
0.000
ESRP2
Gasterosteus aculeatus
ENSGACG00000016359
N
0.000
ESRP2
Gorilla gorilla
ENSGGOG00000010150
I
0.000
ESRP1
Gorilla gorilla
ENSGGOG00000003627
I
0.000
ESRP1
Homo sapiens
ENSG00000104413
I
0.000
ESRP2
Homo sapiens
ENSG00000103067
D
0.000
ESRP2
Loxodonta africana
ENSLAFG00000014609
I
0.000
ESRP2
Macaca mulatta
ENSMMUG00000021846
I
0.000
ESRP1
Macaca mulatta
ENSMMUG00000021112
I
0.000
ESRP2
Macropus eugenii
ENSMEUG00000014322
I
0.000
ESRP1
Meleagris gallopavo
ENSMGAG00000012042
I
0.000
ESRP2
Meleagris gallopavo
ENSMGAG00000003943
I
0.000
ESRP1
Microcebus murinus
ENSMICG00000008757
I
0.000
ESRP2
Microcebus murinus
ENSMICG00000011382
I
0.000
ESRP2
Monodelphis domestica
ENSMODG00000005183
I
0.000
ESRP1
Monodelphis domestica
ENSMODG00000007268
I
0.000
Esrp2
Mus musculus
ENSMUSG00000084128
I
0.000
Esrp1
Mus musculus
ENSMUSG00000040728
I
0.000
ESRP2
Myotis lucifugus
ENSMLUG00000005934
I
0.000
ESRP1
Myotis lucifugus
ENSMLUG00000001816
N
0.000
ESRP1
Ochotona princeps
ENSOPRG00000010595
N
0.000
ESRP2
Ochotona princeps
ENSOPRG00000013401
I
0.000
ESRP1
Ornithorhynchus anatinus
ENSOANG00000004746
I
0.000
ESRP2
Ornithorhynchus anatinus
ENSOANG00000010972
I
0.000
ESRP1
Oryctolagus cuniculus
ENSOCUG00000001316
I
0.000
ESRP2
Oryctolagus cuniculus
ENSOCUG00000001242
I
0.000
ESRP1
Pan troglodytes
ENSPTRG00000020430
I
0.000
ESRP2
Pan troglodytes
ENSPTRG00000008261
I
0.000
ENSPPYG00000018753
Pongo pygmaeus
ENSPPYG00000018753
I
0.000
ENSPPYG00000007484
Pongo pygmaeus
ENSPPYG00000007484
I
0.000
ESRP2
Procavia capensis
ENSPCAG00000005215
I
0.000
ESRP1
Pteropus vampyrus
ENSPVAG00000014513
I
0.000
Esrp2
Rattus norvegicus
ENSRNOG00000023177
I
0.000
RGD1560481
Rattus norvegicus
ENSRNOG00000008184
I
0.000
ESRP2
Sorex araneus
ENSSARG00000014176
I
0.000
ESRP1
Sus scrofa
ENSSSCG00000006099
I
0.000
RBM35B
Taeniopygia guttata
ENSTGUG00000006986
I
0.000
RBM35A
Taeniopygia guttata
ENSTGUG00000011907
I
0.000
ESRP1
Takifugu rubripes
ENSTRUG00000009287
N
0.000
ESRP1
Tarsius syrichta
ENSTSYG00000006036
I
0.000
ESRP1
Tetraodon nigroviridis
ENSTNIG00000018367
N
0.000
ESRP2
Tursiops truncatus
ENSTTRG00000014613
I
0.000
ESRP1
Tursiops truncatus
ENSTTRG00000004226
I
0.000
ESRP1
Vicugna pacos
ENSVPAG00000006566
I
0.000
AAH44002
Xenopus laevis
AAH44002
I
0.000
Q7ZY29
Xenopus laevis
Q7ZY29
I
0.000
esrp1
Xenopus tropicalis
ENSXETG00000014667
I
0.000