gw1.4124.2.1 (Capitella teleta)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 gw1.4124.2.1 T17323_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.718
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.718
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.708
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.708
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.4124.2.1 CSD 4 74

Links

Other CSD family RBPs
Other Capitella teleta RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.704
AAEL001375 Aedes aegypti AAEL001375 I 0.704
AGAP006108 Anopheles gambiae AGAP006108 I 0.704
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.718
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.718
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.732
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.817
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.761
fgenesh1_pg.C_scaffold_1662000001 Capitella teleta fgenesh1_pg.C_scaffold_1662000001 N 0.718
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.761
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.803
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.817
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.746
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.817
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.817
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.750
gw1.863.5.1 Capitella teleta gw1.863.5.1 I 0.915
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.817
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.817
GF10852 Drosophila ananassae FBgn0087892 I 0.704
GH16919 Drosophila grimshawi FBgn0124390 I 0.704
yps Drosophila melanogaster FBgn0022959 I 0.704
GI13673 Drosophila mojavensis FBgn0136428 I 0.704
GL15684 Drosophila persimilis FBgn0153288 I 0.704
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.704
GM24682 Drosophila sechellia FBgn0179545 I 0.704
GD12750 Drosophila simulans FBgn0184477 I 0.704
GJ14010 Drosophila virilis FBgn0201228 I 0.704
GK16710 Drosophila willistoni FBgn0218712 I 0.704
GE20150 Drosophila yakuba FBgn0237472 I 0.704
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.718
PHUM156720 Pediculus humanus PHUM156720 I 0.718
PHUM156710 Pediculus humanus PHUM156710 I 0.732
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.718