SNAPOd2T00011389001 (Oikopleura dioica)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 SNAPOd2T00011389001 T17216_0.6 Genoscope (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.817
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.817
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.806
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.806
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.806
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.778
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00011389001 CSD 149 219

Links

Other CSD family RBPs
Other Oikopleura dioica RBPs

179 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.873
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.847
PHUM156710 Pediculus humanus PHUM156710 I 0.845
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.831
AAA49716 Xenopus laevis AAA49716 I 0.819
AAI55915 Xenopus laevis AAI55915 I 0.819
P21574 Xenopus laevis P21574 I 0.819
AAI69704 Xenopus laevis AAI69704 I 0.819
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.819
ybx2-a Xenopus laevis AAI69706 D 0.819
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.817
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.817
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.817
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.806
CSDA Loxodonta africana ENSLAFG00000017247 I 0.806
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.806
CSDA Macaca mulatta ENSMMUG00000022469 I 0.806
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.806
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.806
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.806
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.806
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.806
YBX1 Microcebus murinus ENSMICG00000014984 I 0.806
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.806
ybx1 Danio rerio ENSDARG00000004757 I 0.806
Csda Dipodomys ordii ENSDORG00000009103 I 0.806
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.806
CSDA Cavia porcellus ENSCPOG00000011329 I 0.806
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.806
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.806
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.806
LOC100072964 Equus caballus ENSECAG00000009996 I 0.806
LOC100067336 Equus caballus ENSECAG00000023592 I 0.806
YB-1 Homo sapiens ENSG00000065978 D 0.806
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.806
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.806
CSDA Homo sapiens ENSG00000060138 I 0.806
CSDA Echinops telfairi ENSETEG00000002557 I 0.806
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.806
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.806
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.806
Ybx1 Mus musculus ENSMUSG00000028639 I 0.806
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.806
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.806
YBX2 Sus scrofa ENSSSCG00000017938 I 0.806
CSDA Sus scrofa ENSSSCG00000000633 I 0.806
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.806
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.806
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.806
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.806
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.806
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.806
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.806
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.806
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.806
Csda Rattus norvegicus ENSRNOG00000005480 I 0.806
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.806
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.806
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.806
Csda Mus musculus ENSMUSG00000030189 I 0.806
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.806
Ybx2 Mus musculus ENSMUSG00000018554 I 0.806
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.806
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.806
CSDA Pan troglodytes ENSPTRG00000004681 I 0.806
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.806
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.806
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.806
YBX2 Procavia capensis ENSPCAG00000008019 I 0.806
CSDA Monodelphis domestica ENSMODG00000018248 I 0.806
LOC100065107 Equus caballus ENSECAG00000013777 I 0.806
P45441 Xenopus laevis P45441 I 0.806
P21573 Xenopus laevis P21573 I 0.806
Q00436 Xenopus laevis Q00436 I 0.806
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.806
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.806
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.806
CAA42778 Xenopus laevis CAA42778 I 0.806
AAI55914 Xenopus laevis AAI55914 I 0.806
AAA49924 Xenopus laevis AAA49924 I 0.806
AAA49715 Xenopus laevis AAA49715 I 0.806
AAH41191 Xenopus laevis AAH41191 I 0.806
AAH42217 Xenopus laevis AAH42217 I 0.806
AAI30161 Xenopus laevis AAI30161 I 0.806
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.806
AAI06324 Xenopus laevis AAI06324 I 0.806
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.806
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.806
YBX2 Canis familiaris ENSCAFG00000016128 I 0.806
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.806
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.803
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.803
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.803
PHUM156720 Pediculus humanus PHUM156720 I 0.803
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.803
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.803
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.792
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.792
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.792
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.792
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.792
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.792
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.792
YBX2 Homo sapiens ENSG00000006047 D 0.792
csda Xenopus tropicalis ENSXETG00000016239 I 0.792
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.792
YBX2 Sorex araneus ENSSARG00000000488 I 0.792
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.792
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.792
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.792
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.792
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.789
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.789
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.778
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.778
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.778
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.778
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.778
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.778
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.778
GF10852 Drosophila ananassae FBgn0087892 I 0.775
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.775
AAEL001375 Aedes aegypti AAEL001375 I 0.775
yps Drosophila melanogaster FBgn0022959 I 0.775
AGAP006108 Anopheles gambiae AGAP006108 I 0.775
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.775
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.775
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.775
GH16919 Drosophila grimshawi FBgn0124390 I 0.775
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.775
GK16710 Drosophila willistoni FBgn0218712 I 0.775
GJ14010 Drosophila virilis FBgn0201228 I 0.775
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.775
GE20150 Drosophila yakuba FBgn0237472 I 0.775
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.775
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.775
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.775
GD12750 Drosophila simulans FBgn0184477 I 0.775
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.775
GL15684 Drosophila persimilis FBgn0153288 I 0.775
GI13673 Drosophila mojavensis FBgn0136428 I 0.775
GM24682 Drosophila sechellia FBgn0179545 I 0.775
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.764
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.764
133388 Helobdella robusta 133388 I 0.761
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.761
Bm1_57515 Brugia malayi Bm1_57515 I 0.761
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.761
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.761
Minc12652 Meloidogyne incognita Minc12652 I 0.761
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.761
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.761
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.750
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.750
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.750
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.746
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.746
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.746
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.746
CSDA Procavia capensis ENSPCAG00000001397 I 0.736
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.736
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.732
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.732
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.732
ISCW005281 Ixodes scapularis ISCW005281 I 0.732
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.732
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.718
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.718
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.718
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.718
CRE01789 Caenorhabditis remanei CRE01789 I 0.718
cey-1 Caenorhabditis elegans F33A8.3 I 0.718
CBN16711 Caenorhabditis brenneri CBN16711 I 0.718
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.718
gw1.4124.2.1 Capitella teleta gw1.4124.2.1 I 0.718
LOAG_11791 Loa loa LOAG_11791 I 0.704
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.704
146547 Helobdella robusta 146547 I 0.704
CBG02981 Caenorhabditis briggsae CBG02981 I 0.704