e_gw1.9027.2.1 (Capitella teleta)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 e_gw1.9027.2.1 T17257_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.803
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.803
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.764
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.764
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.764
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.9027.2.1 CSD 12 82

Links

Other CSD family RBPs
Other Capitella teleta RBPs

168 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.972
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.944
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.944
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.930
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.930
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.915
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.887
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.875
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.873
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.873
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.845
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.817
gw1.4124.2.1 Capitella teleta gw1.4124.2.1 I 0.817
PHUM156710 Pediculus humanus PHUM156710 I 0.817
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.803
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.792
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.792
gw1.863.5.1 Capitella teleta gw1.863.5.1 I 0.789
fgenesh1_pg.C_scaffold_1662000001 Capitella teleta fgenesh1_pg.C_scaffold_1662000001 N 0.789
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.778
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.778
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.778
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.778
CSDA Loxodonta africana ENSLAFG00000017247 I 0.778
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.778
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.778
YBX1 Microcebus murinus ENSMICG00000014984 I 0.778
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.778
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.778
ybx1 Danio rerio ENSDARG00000004757 I 0.778
Csda Dipodomys ordii ENSDORG00000009103 I 0.778
CSDA Macaca mulatta ENSMMUG00000022469 I 0.778
CSDA Cavia porcellus ENSCPOG00000011329 I 0.778
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.778
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.778
LOC100065107 Equus caballus ENSECAG00000013777 I 0.778
CSDA Homo sapiens ENSG00000060138 I 0.778
CSDA Echinops telfairi ENSETEG00000002557 I 0.778
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.778
LOC100067336 Equus caballus ENSECAG00000023592 I 0.778
YB-1 Homo sapiens ENSG00000065978 D 0.778
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.778
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.778
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.778
CSDA Sus scrofa ENSSSCG00000000633 I 0.778
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.778
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.778
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.778
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.778
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.778
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.778
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.778
Csda Rattus norvegicus ENSRNOG00000005480 I 0.778
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.778
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.778
Csda Mus musculus ENSMUSG00000030189 I 0.778
Ybx1 Mus musculus ENSMUSG00000028639 I 0.778
CSDA Monodelphis domestica ENSMODG00000018248 I 0.778
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.778
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.778
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.778
CSDA Pan troglodytes ENSPTRG00000004681 I 0.778
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.778
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.778
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.778
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.778
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.778
Q00436 Xenopus laevis Q00436 I 0.778
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.778
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.778
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.778
P21573 Xenopus laevis P21573 I 0.778
AAI30161 Xenopus laevis AAI30161 I 0.778
AAA49715 Xenopus laevis AAA49715 I 0.778
AAH41191 Xenopus laevis AAH41191 I 0.778
AAH42217 Xenopus laevis AAH42217 I 0.778
AAI06324 Xenopus laevis AAI06324 I 0.778
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.778
CAA42778 Xenopus laevis CAA42778 I 0.778
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.778
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.775
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.775
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.775
AGAP006108 Anopheles gambiae AGAP006108 I 0.775
AAEL001375 Aedes aegypti AAEL001375 I 0.775
PHUM156720 Pediculus humanus PHUM156720 I 0.775
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.775
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.775
P21574 Xenopus laevis P21574 I 0.764
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.764
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.764
AAI69704 Xenopus laevis AAI69704 I 0.764
AAA49716 Xenopus laevis AAA49716 I 0.764
csda Xenopus tropicalis ENSXETG00000016239 I 0.764
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.764
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.764
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.764
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.764
ybx2-a Xenopus laevis AAI69706 D 0.764
AAI55915 Xenopus laevis AAI55915 I 0.764
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.764
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.764
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.761
GM24682 Drosophila sechellia FBgn0179545 I 0.761
GD12750 Drosophila simulans FBgn0184477 I 0.761
GI13673 Drosophila mojavensis FBgn0136428 I 0.761
GF10852 Drosophila ananassae FBgn0087892 I 0.761
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.761
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.761
yps Drosophila melanogaster FBgn0022959 I 0.761
GJ14010 Drosophila virilis FBgn0201228 I 0.761
GH16919 Drosophila grimshawi FBgn0124390 I 0.761
GL15684 Drosophila persimilis FBgn0153288 I 0.761
GE20150 Drosophila yakuba FBgn0237472 I 0.761
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.761
GK16710 Drosophila willistoni FBgn0218712 I 0.761
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.761
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.750
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.750
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.750
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.750
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.750
AAA49924 Xenopus laevis AAA49924 I 0.750
LOC100072964 Equus caballus ENSECAG00000009996 I 0.750
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.750
YBX2 Canis familiaris ENSCAFG00000016128 I 0.750
YBX2 Sus scrofa ENSSSCG00000017938 I 0.750
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.750
P45441 Xenopus laevis P45441 I 0.750
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.750
YBX2 Procavia capensis ENSPCAG00000008019 I 0.750
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.750
Ybx2 Mus musculus ENSMUSG00000018554 I 0.750
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.750
AAI55914 Xenopus laevis AAI55914 I 0.750
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.750
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.750
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.746
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.746
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.746
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.736
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.736
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.736
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.736
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.736
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.736
YBX2 Homo sapiens ENSG00000006047 D 0.736
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.736
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.736
YBX2 Sorex araneus ENSSARG00000000488 I 0.736
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.736
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.736
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.732
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.732
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.732
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.732
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.722
CSDA Procavia capensis ENSPCAG00000001397 I 0.722
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.722
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.718
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.718
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.718
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.718
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.718
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.704
ISCW005281 Ixodes scapularis ISCW005281 I 0.704
Bm1_57515 Brugia malayi Bm1_57515 I 0.704
Minc12652 Meloidogyne incognita Minc12652 I 0.704