CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AGAP004942
(
Anopheles gambiae
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
AGAP004942
T18072_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AGAP004942-PA
KH
23
83
TIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDCSCPERIVTVSGSRSAIYKAFTLI
AGAP004942-PA
KH
107
170
PIRLIVPASQCGSLIGKGGSKIKEIREITGCSIQVASEMLPNSTERAVTLSGSAEAITQCIYHI
AGAP004942-PA
KH
287
352
SHEMTVPNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEERDSGNTDRTITITGNPDSVALAQYLI
Links
Other
KH
family RBPs
Other
Anopheles gambiae
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s5532g9t1
Acyrtosiphon pisum
DGIL_AUG5s5532g9t1
I
0.854
amel4_ncbi_hmm16330
Apis mellifera
amel4_ncbi_hmm16330
I
0.838
BGIBMGA012503
Bombyx mori
BGIBMGA012503
N
0.756
fgenesh2_pg.scaffold_166000022
Branchiostoma floridae
fgenesh2_pg.scaffold_166000022
I
0.723
estExt_gwp.C_3950051
Branchiostoma floridae
estExt_gwp.C_3950051
I
0.723
fgenesh1_pm.C_scaffold_76000004
Capitella teleta
fgenesh1_pm.C_scaffold_76000004
I
0.728
PASA_GEN_0700132
Daphnia pulex
PASA_GEN_0700132
I
0.827
GG16232
Drosophila erecta
FBgn0108467
N
0.911
GH14429
Drosophila grimshawi
FBgn0121905
N
0.916
FBgn0262737
Drosophila melanogaster
FBgn0262737
N
0.911
GI13561
Drosophila mojavensis
FBgn0136316
N
0.911
GA20351-RA
Drosophila pseudoobscura
FBgn0080346
N
0.911
GJ11921
Drosophila virilis
FBgn0199174
N
0.911
GK10610
Drosophila willistoni
FBgn0212625
N
0.916
GE22592
Drosophila yakuba
FBgn0239809
N
0.911
ISCW016289
Ixodes scapularis
ISCW016289
I
0.728
nasonia_NCBI_hmm938274
Nasonia vitripennis
nasonia_NCBI_hmm938274
I
0.901