CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP4
(
Taeniopygia guttata
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSTGUG00000006393
T19576_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.758
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.711
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.705
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.700
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.700
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000006570
KH
17
76
TLRMLMHGKEIGSIIGKKGETVKRIREQSTARITISEGSCPERITTITGTDAVFRAVSMI
ENSTGUP00000006570
KH
99
162
TLRLVIPASQCGSLIGKAGAKIREIRESTGAQVQVAGDLLPNSTERAVTVSGVPDTIIQCVRKM
ENSTGUP00000006570
KH
242
304
SQEFLVPNDLIGCIIGRHGSKISEIRQMSGAHIKIGNQTEGSSERHVTITGTPVSITLAQYLI
Links
Other
KH
family RBPs
Other
Taeniopygia guttata
RBPs
94 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ013912
Culex quinquefasciatus
CPIJ013912
N
0.000