CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP4
(
Taeniopygia guttata
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSTGUG00000006393
T19576_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.758
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.711
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.705
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.700
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.700
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000006570
KH
17
76
TLRMLMHGKEIGSIIGKKGETVKRIREQSTARITISEGSCPERITTITGTDAVFRAVSMI
ENSTGUP00000006570
KH
99
162
TLRLVIPASQCGSLIGKAGAKIREIRESTGAQVQVAGDLLPNSTERAVTVSGVPDTIIQCVRKM
ENSTGUP00000006570
KH
242
304
SQEFLVPNDLIGCIIGRHGSKISEIRQMSGAHIKIGNQTEGSSERHVTITGTPVSITLAQYLI
Links
Other
KH
family RBPs
Other
Taeniopygia guttata
RBPs
94 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PCBP4
Anolis carolinensis
ENSACAG00000011701
I
0.952
PCBP4
Ornithorhynchus anatinus
ENSOANG00000014110
I
0.915
A6MK33_CALJA
Callithrix jacchus
ENSCJAG00000005783
I
0.899
Pcbp4
Mus musculus
ENSMUSG00000023495
I
0.899
PCBP4
Macaca mulatta
ENSMMUG00000022205
I
0.899
PCBP4_BOVIN
Bos taurus
ENSBTAG00000018622
I
0.899
PCBP4
Oryctolagus cuniculus
ENSOCUG00000025336
I
0.899
PCBP4
Canis familiaris
ENSCAFG00000010019
I
0.899
PCBP4
Gorilla gorilla
ENSGGOG00000012474
I
0.899
LOC100060660
Equus caballus
ENSECAG00000024218
I
0.899
Pcbp4
Rattus norvegicus
ENSRNOG00000012406
I
0.899
PCBP4
Homo sapiens
ENSG00000090097
I
0.899
PCBP4
Pan troglodytes
ENSPTRG00000014983
I
0.899
ENSPPYG00000013822
Pongo pygmaeus
ENSPPYG00000013822
I
0.899
PCBP4
Cavia porcellus
ENSCPOG00000014617
I
0.894
PCBP4
Monodelphis domestica
ENSMODG00000011790
I
0.856
PCBP4
Takifugu rubripes
ENSTRUG00000007426
I
0.788
PCBP4
Gasterosteus aculeatus
ENSGACG00000002664
I
0.788
ENSACAG00000009819
Anolis carolinensis
ENSACAG00000009819
I
0.779
PCBP4
Tetraodon nigroviridis
ENSTNIG00000017887
I
0.778
PCBP3
Gallus gallus
ENSGALG00000013155
I
0.774
PCBP3-2
Taeniopygia guttata
ENSTGUG00000008158
I
0.768
PCBP4
Loxodonta africana
ENSLAFG00000010732
N
0.761
PCBP3
Cavia porcellus
ENSCPOG00000003648
I
0.758
PCBP3
Pan troglodytes
ENSPTRG00000014010
I
0.758
Pcbp3
Rattus norvegicus
ENSRNOG00000001245
I
0.758
LOC100050101
Equus caballus
ENSECAG00000012413
I
0.758
PCBP3
Homo sapiens
ENSG00000183570
I
0.758
PCBP3
Gorilla gorilla
ENSGGOG00000003683
I
0.758
PCBP3
Tursiops truncatus
ENSTTRG00000015075
I
0.758
PCBP3
Meleagris gallopavo
ENSMGAG00000001883
I
0.758
PCBP3
Macaca mulatta
ENSMMUG00000003825
I
0.758
PCBP3
Anolis carolinensis
ENSACAG00000004607
I
0.758
Pcbp3
Mus musculus
ENSMUSG00000001120
D
0.758
PCBP3
Oryctolagus cuniculus
ENSOCUG00000002696
I
0.758
LOC100408015
Callithrix jacchus
ENSCJAG00000001903
I
0.758
Q17QV0_BOVIN
Bos taurus
ENSBTAG00000030775
I
0.747
ENSMGAG00000006794
Meleagris gallopavo
ENSMGAG00000006794
I
0.742
PCBP3
Gasterosteus aculeatus
ENSGACG00000014955
I
0.742
PCBP3
Takifugu rubripes
ENSTRUG00000013604
I
0.742
PCBP3
Tetraodon nigroviridis
ENSTNIG00000010615
I
0.742
D3ZWQ9_RAT
Rattus norvegicus
ENSRNOG00000038946
N
0.741
PCBP3
Takifugu rubripes
ENSTRUG00000006280
I
0.737
PCBP3
Macropus eugenii
ENSMEUG00000012960
I
0.737
PCBP3
Gallus gallus
ENSGALG00000004394
I
0.732
PCBP3
Gasterosteus aculeatus
ENSGACG00000002266
I
0.732
ENSORLG00000014385
Oryzias latipes
ENSORLG00000014385
I
0.732
PCBP3
Oryzias latipes
ENSORLG00000000059
I
0.716
PCBP3
Ochotona princeps
ENSOPRG00000003431
I
0.715
PCBP4
Oryzias latipes
ENSORLG00000003061
I
0.714
CAD29864
Xenopus laevis
CAD29864
I
0.711
CAB50743
Xenopus laevis
CAB50743
I
0.711
AAH84195
Xenopus laevis
AAH84195
I
0.711
pcbp3
Xenopus tropicalis
ENSXETG00000012658
I
0.711
AAH41241
Xenopus laevis
AAH41241
I
0.711
pcbp2
Danio rerio
ENSDARG00000013184
D
0.711
ENSGACG00000003044
Gasterosteus aculeatus
ENSGACG00000003044
I
0.709
PCBP2
Ochotona princeps
ENSOPRG00000004680
I
0.705
ENSLAFG00000013187
Loxodonta africana
ENSLAFG00000013187
I
0.705
PCBP2
Tursiops truncatus
ENSTTRG00000017174
I
0.705
PCBP2
Procavia capensis
ENSPCAG00000005154
I
0.705
ENSPPYG00000004581
Pongo pygmaeus
ENSPPYG00000004581
I
0.705
PCBP2
Homo sapiens
ENSG00000197111
D
0.705
PCBP2
Sus scrofa
ENSSSCG00000000274
I
0.705
PCBP2
Pteropus vampyrus
ENSPVAG00000012284
I
0.705
PCBP2
Dasypus novemcinctus
ENSDNOG00000008688
I
0.705
PCBP2
Pan troglodytes
ENSPTRG00000005018
I
0.705
ENSOCUG00000022490
Oryctolagus cuniculus
ENSOCUG00000022490
I
0.705
ENSCPOG00000000967
Cavia porcellus
ENSCPOG00000000967
I
0.705
PCBP2
Canis familiaris
ENSCAFG00000006821
I
0.705
ENSMODG00000000280
Monodelphis domestica
ENSMODG00000000280
I
0.705
ENSACAG00000000783
Anolis carolinensis
ENSACAG00000000783
I
0.705
PCBP2
Microcebus murinus
ENSMICG00000011651
I
0.705
Q3SYT9_BOVIN
Bos taurus
ENSBTAG00000020757
I
0.705
PCBP2
Gorilla gorilla
ENSGGOG00000012613
I
0.705
PCBP2
Macaca mulatta
ENSMMUG00000006608
I
0.705
PCBP2
Equus caballus
ENSECAG00000022389
I
0.705
Pcbp2
Mus musculus
ENSMUSG00000056851
I
0.705
ENSTRUG00000017789
Takifugu rubripes
ENSTRUG00000017789
I
0.704
PCBP1_BOVIN
Bos taurus
ENSBTAG00000008985
I
0.700
PCBP1_RABIT
Oryctolagus cuniculus
ENSOCUG00000003634
I
0.700
LOC100050579
Equus caballus
ENSECAG00000002544
I
0.700
Pcbp1
Rattus norvegicus
ENSRNOG00000017708
I
0.700
ENSCJAG00000034075
Callithrix jacchus
ENSCJAG00000034075
I
0.700
PCBP1
Homo sapiens
ENSG00000169564
D
0.700
ENSTRUG00000011419
Takifugu rubripes
ENSTRUG00000011419
I
0.700
PCBP1
Pan troglodytes
ENSPTRG00000012025
I
0.700
Pcbp1
Mus musculus
ENSMUSG00000051695
D
0.700
PCBP1
Gorilla gorilla
ENSGGOG00000028130
I
0.700
Ame_R002707
Ailuropoda melanoleuca
Ame_R002707
I
0.700
ENSPPYG00000012328
Pongo pygmaeus
ENSPPYG00000012328
I
0.700
ENSORLG00000005176
Oryzias latipes
ENSORLG00000005176
I
0.700
PCBP1
Cavia porcellus
ENSCPOG00000013511
I
0.700
PCBP1
Myotis lucifugus
ENSMLUG00000014173
I
0.700