CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM21884
(
Drosophila sechellia
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
FBgn0176761
T19947_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0203361
KH
116
161
GESKRICQQITKETGAQIEIVSGKNQSLTFLIKGKQSELLDARRKI
FBpp0203361
KH
170
230
SRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQGDESEFITIAGTKEGIAQAEQEI
FBpp0203361
KH
242
302
SDRITVPKVYHPFIVGPYSENLNKLQEETGARINVPPQQVQKDEIFISGEKDAVAAAKAKV
FBpp0203361
KH
315
375
TVSVEVAKPKHRYVIGPKGSTIAEILQLTGVSVEMPPNDSPSETITLRGPQVALGNALTVV
FBpp0203361
KH
382
440
VKSVEINAAHWIHKYVIGRKGANMKQLEEDCPNVNVNCLDDKIKLEGDPENVDRAVAYL
FBpp0203361
KH
453
512
FEVMTVNPSYYKHIIGKAGANVNRLKDELKVNINIEEREGQNNIRIEGPKEGVRQAQLEL
FBpp0203361
KH
524
585
SKDVIIDRRLHRSIIGAKGEKIREVKDRYRQVTITIPTPQENTDIVKLRGPKEDVDKCHKDL
FBpp0203361
KH
598
658
IIEVPIFKQFHKFVIGKGGANIKKIRDETQTKIDLPAEGDTNEVIVITGKKENVLEAKERI
FBpp0203361
KH
670
731
TEEVQIPPKYYNSIIGTGGKLISSIMEECGGLSIKFPNSDSKSDKVTIRGPKDDVEKAKVQL
FBpp0203361
KH
744
805
TAEVRAKQQHHKFLIGKNGASIRKIRDATGARIIFPSNEDTDKEVITIIGKEESVKKAREQL
FBpp0203361
KH
817
878
EGEVSVDPKHHKHFVAKRGFILHRISEECGGVMISFPRVGTNSDKVTIKGAKDCIEAARQRI
FBpp0203361
KH
890
988
TIEVVIPQRHHRTIMGARGLKVQQVTFEFDVQIKFPDRDATEPVEGLTNGGSGENGGENEGQEGEQEVEEKAEQEPVRQCDVIRITGRIEKCEAAKQAL
FBpp0203361
KH
995
1055
EQELSVPFDLHRTIIGPRGANVRQFMSKHDVHVELPHSELKSDVIKVCGTPACVAEAREAL
FBpp0203361
KH
1075
1136
VLHVDVDLEFRPKLIGRHGAVIKKLRADHDVNISLPMRNEPNDRIISITGYQANAEAARDAI
FBpp0203361
KH
1148
1208
REVIEIDKRIHRHLIGPRRRTLRTIMEDNKVNIKFPFDQTNPNSITISGKIEDVENVKELL
Links
Other
KH
family RBPs
Other
Drosophila sechellia
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF12176
Drosophila ananassae
FBgn0089215
N
0.897
GG21892
Drosophila erecta
FBgn0114070
N
0.944
GH21672
Drosophila grimshawi
FBgn0129133
N
0.859
Dp1
Drosophila melanogaster
FBgn0027835
N
0.969
GI20125
Drosophila mojavensis
FBgn0142861
N
0.877
GL17775
Drosophila persimilis
FBgn0155378
N
0.870
GA18708-RA
Drosophila pseudoobscura
FBgn0078708
N
0.891
GD11380
Drosophila simulans
FBgn0183129
N
0.985
GJ19895
Drosophila virilis
FBgn0207037
N
0.877
GK22993
Drosophila willistoni
FBgn0224955
N
0.884
GE11968
Drosophila yakuba
FBgn0229746
N
0.942