CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pg.C_120096
(
Neurospora discreta
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
estExt_fgenesh2_pg.C_120096
T20876_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_120096
KH
263
336
DAVQIDLSVQPLLCGRNRKNIKHIESATNTAIYFPPCFSHAYGYCPPGALRRNPDEVFITGETPEAISQAKTRI
estExt_fgenesh2_pg.C_120096
KH
440
474
LSDVCANSDADIAFDKVAFTLTGSDEAVKEALQVL
estExt_fgenesh2_pg.C_120096
KH
487
544
IRVKIELANEHKEFVSGKKNGKINKIMSHCNVQIVFDNFGEYNFNIDVLAHNYTSMKE
estExt_fgenesh2_pg.C_120096
KH
556
626
SISFHVPDQYHKRIIGIGGQHIQRIMKKHSVFVKFSNAMDRGGMGRDDDDSRVDNVICRTPARNAQNLELV
estExt_fgenesh2_pg.C_120096
KH
662
698
EIEVLEKKYNCKISFPSTEQASDEVTVQGPQWQVPMC
Links
Other
KH
family RBPs
Other
Neurospora discreta
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FGSG_06181
Fusarium graminearum
FGSG_06181
N
0.706
FOXG_08528
Fusarium oxysporum
FOXG_08528
N
0.707
FVEG_06144
Fusarium verticillioides
FVEG_06144
N
0.707
e_gw1.1.3735.1
Myceliophthora thermophila
e_gw1.1.3735.1
N
0.730
NCU05266
Neurospora crassa
NCU05266
N
1.000
estExt_fgenesh1_pg.C_670017
Neurospora tetrasperma
estExt_fgenesh1_pg.C_670017
N
0.996
Pa_3_4120
Podospora anserina
Pa_3_4120
N
0.727