CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FGSG_06181
(
Fusarium graminearum
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
FGSG_06181
T17644_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FGSG_06181T0
KH
265
336
TKLDVSCHQLVCGRHRKNIKLIESSTGTAIYFPPPFSAMYRYCPPNATRRDPSDILITGETPQAIELAKQKL
FGSG_06181T0
KH
438
474
SMLVDICANSDADISFDRLNFAITGSDDAVKSALQVI
FGSG_06181T0
KH
487
546
IRVKIELANEHKEFVSGKKNGKINKIMGQSNVQIIFDGFNEYNFNIDVMAAAYDSMKQGL
FGSG_06181T0
KH
556
627
SISFHVPDQYHKRIIGIGGQHIQRIMKKHSVFVKFSNAMDRGGMGREDDDIKVDNVICRTPARNAQNLDAVK
FGSG_06181T0
KH
645
700
IVSVDRLYHRQLIARLPEIDGLEQKYNCKINFPSTEQASDEVTVNGPQWQVPHCVD
Links
Other
KH
family RBPs
Other
Fusarium graminearum
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FOXG_08528
Fusarium oxysporum
FOXG_08528
N
0.930
FVEG_06144
Fusarium verticillioides
FVEG_06144
N
0.930
estExt_GeneWisePlus.C_20165
Trichoderma reesei
estExt_GeneWisePlus.C_20165
N
0.887
e_gw1.2.59.1
Trichoderma atroviride
e_gw1.2.59.1
N
0.865
Pc12g11760
Penicillium chrysogenum
Pc12g11760
N
0.733
fgenesh1_pg.00866_#_126
Aspergillus carbonarius
fgenesh1_pg.00866_#_126
N
0.728
e_gw1.1.3735.1
Myceliophthora thermophila
e_gw1.1.3735.1
N
0.726
ATEG_01323
Aspergillus terreus
CADATEAG00002653
N
0.725
HCAG_05999
Histoplasma capsulatum
HCAG_05999
N
0.713
MCYG_03492
Microsporum canis
MCYG_03492
N
0.709
NCU05266
Neurospora crassa
NCU05266
N
0.706
estExt_fgenesh2_pg.C_120096
Neurospora discreta
estExt_fgenesh2_pg.C_120096
N
0.706
estExt_fgenesh1_pg.C_670017
Neurospora tetrasperma
estExt_fgenesh1_pg.C_670017
N
0.706
UREG_06534
Uncinocarpus reesii
UREG_06534
N
0.703