CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FOXG_08528
(
Fusarium oxysporum
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
FOXG_08528
T17654_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FOXG_08528T0
KH
253
323
KLEASLHQLVCGRHRKNIKLIESSTGTAIYFPPPFSAMYRYCPPKATRRDPNDIFITGETPQAIELAKQKL
FOXG_08528T0
KH
406
440
LVDICANSDADLSFDKLSFTITGSDDAVKTALQVI
FOXG_08528T0
KH
453
515
IRVKIELANEHKEFVSGKKNGKINKIMGQSNVQIIFDGFNEYNFNIDVMAATYESMKQGLTLV
FOXG_08528T0
KH
522
593
SISFHVPDQYHKRIIGIGGQHIQRIMKKHSVFVKFSNAMDRGGMGREDDDIKVDNVICRTPARNAQNLDAVK
FOXG_08528T0
KH
611
666
IVSVDRLYHRQLIARLPEIDDLEQKYNCKINFPSTEQASDEVTVNGPQWQVPHCVD
Links
Other
KH
family RBPs
Other
Fusarium oxysporum
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FVEG_06144
Fusarium verticillioides
FVEG_06144
N
0.997
FGSG_06181
Fusarium graminearum
FGSG_06181
N
0.930
estExt_GeneWisePlus.C_20165
Trichoderma reesei
estExt_GeneWisePlus.C_20165
N
0.887
e_gw1.2.59.1
Trichoderma atroviride
e_gw1.2.59.1
N
0.881
fgenesh1_pg.00866_#_126
Aspergillus carbonarius
fgenesh1_pg.00866_#_126
N
0.738
Pc12g11760
Penicillium chrysogenum
Pc12g11760
N
0.733
ATEG_01323
Aspergillus terreus
CADATEAG00002653
N
0.725
MCYG_03492
Microsporum canis
MCYG_03492
N
0.719
HCAG_05999
Histoplasma capsulatum
HCAG_05999
N
0.714
estExt_fgenesh2_pg.C_120096
Neurospora discreta
estExt_fgenesh2_pg.C_120096
N
0.707
NCU05266
Neurospora crassa
NCU05266
N
0.707
e_gw1.1.3735.1
Myceliophthora thermophila
e_gw1.1.3735.1
N
0.707
estExt_fgenesh1_pg.C_670017
Neurospora tetrasperma
estExt_fgenesh1_pg.C_670017
N
0.707
ACLA_074000
Aspergillus clavatus
CADACLAG00007261
N
0.705
estExt_Genewise1Plus.C_210177
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_210177
N
0.704
UREG_06534
Uncinocarpus reesii
UREG_06534
N
0.702
estExt_Genewise1Plus.C_140444
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_140444
N
0.700