CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PNPT1
(
Taeniopygia guttata
)
KH,S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00575 (S1)
IPR018111
IPR003029
ENSTGUG00000006908
T22382_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000007158
KH
554
611
VETIHVPLSKRLRFVGPGAYNLKKLQAQTGVTVSQLDEETYSVFAPTPGAMHEAREFI
ENSTGUP00000007158
S1
622
697
NLEFGAIYTATITEIRDSGVMVKLYPNMTPVLLHISQLDQRKIKHPSALGLEVGHEIQVKYFGRDPTDGRMRLSRK
Links
Other
KH,S1
family RBPs
Other
Taeniopygia guttata
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R001792
Ailuropoda melanoleuca
Ame_R001792
N
0.858
PNPT1
Anolis carolinensis
ENSACAG00000003692
N
0.888
PNPT1
Bos taurus
ENSBTAG00000008909
N
0.843
PNPT1
Callithrix jacchus
ENSCJAG00000009740
N
0.858
PNPT1
Canis familiaris
ENSCAFG00000002891
N
0.851
PNPT1
Cavia porcellus
ENSCPOG00000011008
N
0.843
PNPT1
Choloepus hoffmanni
ENSCHOG00000007360
N
0.828
PNPT1
Echinops telfairi
ENSETEG00000001582
N
0.739
LOC100052355
Equus caballus
ENSECAG00000020058
N
0.851
PNPT1
Felis catus
ENSFCAG00000013236
N
0.836
PNPT1
Gallus gallus
ENSGALG00000007935
N
0.948
PNPT1
Gasterosteus aculeatus
ENSGACG00000010840
N
0.784
PNPT1
Gorilla gorilla
ENSGGOG00000006867
N
0.726
PNPT1
Homo sapiens
ENSG00000138035
N
0.851
PNPT1
Meleagris gallopavo
ENSMGAG00000001952
N
0.948
PNPT1
Monodelphis domestica
ENSMODG00000001984
N
0.843
Pnpt1
Mus musculus
ENSMUSG00000020464
N
0.843
PNPT1
Myotis lucifugus
ENSMLUG00000003886
N
0.828
PNPT1
Ochotona princeps
ENSOPRG00000010232
N
0.836
ENSOANG00000011178
Ornithorhynchus anatinus
ENSOANG00000011178
N
0.818
PNPT1
Oryctolagus cuniculus
ENSOCUG00000006889
N
0.828
PNPT1
Oryzias latipes
ENSORLG00000004335
N
0.836
PNPT1
Pan troglodytes
ENSPTRG00000011934
N
0.851
ENSPPYG00000012399
Pongo pygmaeus
ENSPPYG00000012399
N
0.836
PNPT1
Procavia capensis
ENSPCAG00000010806
N
0.828
Pnpt1
Rattus norvegicus
ENSRNOG00000003600
N
0.836
PNPT1
Spermophilus tridecemlineatus
ENSSTOG00000006304
N
0.851
PNPT1
Sus scrofa
ENSSSCG00000008399
N
0.828
PNPT1
Takifugu rubripes
ENSTRUG00000005495
N
0.754
PNPT1
Tetraodon nigroviridis
ENSTNIG00000007460
N
0.813
PNPT1
Tursiops truncatus
ENSTTRG00000000029
N
0.828
PNPT1
Vicugna pacos
ENSVPAG00000007097
N
0.843
pnpt1
Xenopus tropicalis
ENSXETG00000006075
N
0.858