VDAG_05909 (Verticillium dahliae)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 VDAG_05909 T23965_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
VDAG_05909T0 PUF 424 458
VDAG_05909T0 PUF 460 492
VDAG_05909T0 PUF 496 531
VDAG_05909T0 PUF 532 565
VDAG_05909T0 PUF 568 602
VDAG_05909T0 PUF 604 638
VDAG_05909T0 PUF 641 674
VDAG_05909T0 PUF 688 713

Links

Other PUF family RBPs
Other Verticillium dahliae RBPs

9 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BC1G_11734 Botrytis cinerea BC1G_11734 N 0.739
GLRG_00003 Colletotrichum graminicola GLRG_00003 N 0.882
MGG_04985 Magnaporthe oryzae MGG_04985 N 0.758
estExt_fgenesh1_pg.C_40306 Myceliophthora thermophila estExt_fgenesh1_pg.C_40306 N 0.721
SS1G_00079 Sclerotinia sclerotiorum SS1G_00079 N 0.739
estExt_Genewise1Plus.C_12215 Trichoderma atroviride estExt_Genewise1Plus.C_12215 N 0.740
e_gw1.9.204.1 Trichoderma reesei e_gw1.9.204.1 N 0.746
e_gw1.7.729.1 Trichoderma virens e_gw1.7.729.1 N 0.728
VDBG_06846 Verticillium albo atrum VDBG_06846 N 0.985