cassava40376.m1 (Manihot esculenta)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 cassava40376.m1 T27321_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava40376.m1 RanBP ZF 282 310
cassava40376.m1 RanBP ZF 326 352
cassava40376.m1 RanBP ZF 360 388

Links

Other RanBP ZF family RBPs
Other Manihot esculenta RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002887274.1 Arabidopsis lyrata fgenesh2_kg.2__1324__AT1G70650.1 N 0.741
AT1G70650 Arabidopsis thaliana AT1G70650-TAIR-G N 0.729
BRADI1G11397 Brachypodium distachyon BRADI1G11397 N 0.729
PK11073.1 Cannabis sativa PK11073.1 N 0.835
Cucsa.012170 Cucumis sativus Cucsa.012170 N 0.706
Glyma02g09300.1 Glycine max Glyma02g09300.1 N 0.859
MDP0000132719 Malus x domestica MDP0000132719 N 0.800
MDP0000243554 Malus x domestica MDP0000243554 N 0.800
AC233676_26 Medicago truncatula AC233676_26 N 0.765
mgf021126m Mimulus guttatus mgf021126m N 0.744
BGIOSIBCE012723 Oryza indica BGIOSIBCE012723 N 0.741
LOC_Os03g50430 Oryza sativa LOC_Os03g50430 N 0.741
PDK_20s1517711g001 Phoenix dactylifera PDK_20s1517711g001 N 0.764
B9HW23_POPTR Populus trichocarpa POPTR_0010s11770 N 0.882
ppa003582m Prunus persica ppa003582m N 0.882
29673.m000937 Ricinus communis 29673.m000937 N 0.929
SB01G010310 Sorghum bicolor Sb01g010310 N 0.741
GSVIVG00011669001 Vitis vinifera GSVIVG00011669001 N 0.812
GRMZM2G090190 Zea mays GRMZM2G090190 N 0.741