B9HW23_POPTR (Populus trichocarpa)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 POPTR_0010s11770 T27090_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s11770.1 RanBP ZF 278 305
POPTR_0010s11770.1 RanBP ZF 322 348
POPTR_0010s11770.1 RanBP ZF 356 384

Links

Other RanBP ZF family RBPs
Other Populus trichocarpa RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29673.m000937 Ricinus communis 29673.m000937 N 0.905
cassava40376.m1 Manihot esculenta cassava40376.m1 N 0.882
ppa003582m Prunus persica ppa003582m N 0.869
PK11073.1 Cannabis sativa PK11073.1 N 0.845
Glyma02g09300.1 Glycine max Glyma02g09300.1 N 0.833
MDP0000132719 Malus x domestica MDP0000132719 N 0.821
MDP0000243554 Malus x domestica MDP0000243554 N 0.821
GSVIVG00011669001 Vitis vinifera GSVIVG00011669001 N 0.798
XM_002887274.1 Arabidopsis lyrata fgenesh2_kg.2__1324__AT1G70650.1 N 0.786
AT1G70650 Arabidopsis thaliana AT1G70650-TAIR-G N 0.774
AC233676_26 Medicago truncatula AC233676_26 N 0.762
mgf021126m Mimulus guttatus mgf021126m N 0.741
PDK_20s1517711g001 Phoenix dactylifera PDK_20s1517711g001 N 0.730
GRMZM2G090190 Zea mays GRMZM2G090190 N 0.729
SB01G010310 Sorghum bicolor Sb01g010310 N 0.729
BGIOSIBCE012723 Oryza indica BGIOSIBCE012723 N 0.729
LOC_Os03g50430 Oryza sativa LOC_Os03g50430 N 0.729
BRADI1G11397 Brachypodium distachyon BRADI1G11397 N 0.718
Cucsa.012170 Cucumis sativus Cucsa.012170 N 0.714