CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BC1G_15665
(
Botrytis cinerea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BC1G_15665
T28266_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BC1T_15665
RRM
10
80
VFVGNIPYGLTEEQIIDIFSSAGNVVNFRLVYDRETGRPKGFGFAEYPDSDSAASAVRNLNDYEIMNRKLR
Links
Other
RRM
family RBPs
Other
Botrytis cinerea
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s17283g3t1
Acyrtosiphon pisum
DGIL_AUG5s17283g3t1
N
0.000
AAEL013723
Aedes aegypti
AAEL013723
N
0.000
AGAP003945
Anopheles gambiae
AGAP003945
N
0.000
GG11844
Drosophila erecta
FBgn0104139
N
0.000
GH17472
Drosophila grimshawi
FBgn0124942
N
0.000
heph
Drosophila melanogaster
FBgn0011224
N
0.000
GI22798
Drosophila mojavensis
FBgn0145525
N
0.000
GA15927-RA
Drosophila pseudoobscura
FBgn0075943
N
0.000
GM16408
Drosophila sechellia
FBgn0171323
N
0.000
GD16206
Drosophila simulans
FBgn0187834
N
0.000
GJ22800
Drosophila virilis
FBgn0209904
N
0.000
GK10936
Drosophila willistoni
FBgn0212947
N
0.000
GE23291
Drosophila yakuba
FBgn0240488
N
0.000
ISCW018130
Ixodes scapularis
ISCW018130
N
0.000
nasonia_NCBI_hmm329034
Nasonia vitripennis
nasonia_NCBI_hmm329034
N
0.000