CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAEL013723
(
Aedes aegypti
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAEL013723
T32427_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAEL013723-PA
RRM
17
73
VHIRNIPNESSEVDVMHLGVPFGRVTNVLVLKGKNQAFLEMADETAATSMVTMFTAT
AAEL013723-PA
RRM
156
222
VIVESLLYPVSLDILYQIFQRFGKVLKIVTFTKNNSFQALIQYPDAATAQLAKQTLDGQNIYNGCCT
AAEL013723-PA
RRM
347
413
LLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPHQAYLAMTHLDKLRIWNKTIR
AAEL013723-PA
RRM
464
529
LHLSNIPATVTEEEIKEAFTKNGFEVKAFKFFPKDHKMALIQLSSIEEAVCALIKMHNYQLSESNH
Links
Other
RRM
family RBPs
Other
Aedes aegypti
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AGAP003945
Anopheles gambiae
AGAP003945
N
0.899
GK10936
Drosophila willistoni
FBgn0212947
N
0.844
GI22798
Drosophila mojavensis
FBgn0145525
N
0.844
GA15927-RA
Drosophila pseudoobscura
FBgn0075943
N
0.844
GH17472
Drosophila grimshawi
FBgn0124942
N
0.844
GE23291
Drosophila yakuba
FBgn0240488
N
0.840
GJ22800
Drosophila virilis
FBgn0209904
N
0.840
heph
Drosophila melanogaster
FBgn0011224
N
0.837
GM16408
Drosophila sechellia
FBgn0171323
N
0.833
GD16206
Drosophila simulans
FBgn0187834
N
0.833
GG11844
Drosophila erecta
FBgn0104139
N
0.833
nasonia_NCBI_hmm329034
Nasonia vitripennis
nasonia_NCBI_hmm329034
N
0.798
PASA_GEN_1900109
Daphnia pulex
PASA_GEN_1900109
N
0.775
GF17502
Drosophila ananassae
FBgn0094520
N
0.767
DGIL_AUG5s17283g3t1
Acyrtosiphon pisum
DGIL_AUG5s17283g3t1
N
0.756
ISCW018130
Ixodes scapularis
ISCW018130
N
0.715