CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AGAP003945
(
Anopheles gambiae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AGAP003945
T32497_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AGAP003945-PA
RRM
74
128
VHIRNIPNEVSEAEIMQLGLPFGRVTNVLVLKGKNQAFIEMGDETAASTMVSVFH
AGAP003945-PA
RRM
218
284
VIVESLLYPVSLDVLHQIFQRFGKVLKIVTFTKNNSFQALIQYPDAQTAQTARASLDGQNIYNGCCT
AGAP003945-PA
RRM
409
475
LLVSNLNDEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPYQAYLAMTHLDKLRIWNKTIR
AGAP003945-PA
RRM
526
591
LHLSNIPATVTEDEIKEAFTKNSFEVKAFKFFPKDHKMALIQLSSIEEAVCALIKMHNYQLSESNH
Links
Other
RRM
family RBPs
Other
Anopheles gambiae
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL013723
Aedes aegypti
AAEL013723
N
0.899
GK10936
Drosophila willistoni
FBgn0212947
N
0.828
GE23291
Drosophila yakuba
FBgn0240488
N
0.825
GM16408
Drosophila sechellia
FBgn0171323
N
0.825
GD16206
Drosophila simulans
FBgn0187834
N
0.825
GH17472
Drosophila grimshawi
FBgn0124942
N
0.824
GA15927-RA
Drosophila pseudoobscura
FBgn0075943
N
0.821
GI22798
Drosophila mojavensis
FBgn0145525
N
0.821
heph
Drosophila melanogaster
FBgn0011224
N
0.818
GJ22800
Drosophila virilis
FBgn0209904
N
0.817
GG11844
Drosophila erecta
FBgn0104139
N
0.812
nasonia_NCBI_hmm329034
Nasonia vitripennis
nasonia_NCBI_hmm329034
N
0.786
PASA_GEN_1900109
Daphnia pulex
PASA_GEN_1900109
N
0.763
GF17502
Drosophila ananassae
FBgn0094520
N
0.751
DGIL_AUG5s17283g3t1
Acyrtosiphon pisum
DGIL_AUG5s17283g3t1
N
0.750