CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s17283g3t1
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s17283g3t1
T32034_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s17283g3t1
RRM
118
173
IHIRNIPNEVTEAEVIHLGIPFGKVTNVLVLKGKNQAFLEMADETSASAMVTYFTT
DGIL_AUG5s17283g3t1
RRM
232
298
VIVEHMVFPISLDVLYEIFSRYGKVLKIVTFTKNNSFQVLIQYPDVVTAQSAKLSLDGQNIYTSCCK
DGIL_AUG5s17283g3t1
RRM
447
513
LLVSNLNEEMVTPDAIFTLFGVYGDVLRVKILYNKKDGALVQMAEPHQAHLAMLHLDKVRLYGKYIR
DGIL_AUG5s17283g3t1
RRM
564
629
LHLSNIPTTLSEDFLKTAFENNTFTVKDFKFFPKDRKMALIQMESLEEAVAALIKMHNYRLSEQNH
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm329034
Nasonia vitripennis
nasonia_NCBI_hmm329034
N
0.770
PASA_GEN_1900109
Daphnia pulex
PASA_GEN_1900109
N
0.759
GD16206
Drosophila simulans
FBgn0187834
N
0.756
GM16408
Drosophila sechellia
FBgn0171323
N
0.756
AAEL013723
Aedes aegypti
AAEL013723
N
0.756
GE23291
Drosophila yakuba
FBgn0240488
N
0.752
heph
Drosophila melanogaster
FBgn0011224
N
0.752
AGAP003945
Anopheles gambiae
AGAP003945
N
0.750
GK10936
Drosophila willistoni
FBgn0212947
N
0.747
GH17472
Drosophila grimshawi
FBgn0124942
N
0.739
GG11844
Drosophila erecta
FBgn0104139
N
0.739
GA15927-RA
Drosophila pseudoobscura
FBgn0075943
N
0.736
GI22798
Drosophila mojavensis
FBgn0145525
N
0.736
GJ22800
Drosophila virilis
FBgn0209904
N
0.736