CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI1G29990
(
Brachypodium distachyon
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BRADI1G29990
T33138_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI1G29990.1
RRM
68
138
LYVTGLSSKVTDRELKDYFNKEGKVVSCHVVLEPHTRVSRGFAFITMDTVEDAERCIKYLNQSELQGRHIT
Links
Other
RRM
family RBPs
Other
Brachypodium distachyon
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002867008.1
Arabidopsis lyrata
scaffold_700530.1
N
0.732
AT4G35785
Arabidopsis thaliana
AT4G35785-TAIR-G
N
0.704
PK15963.1
Cannabis sativa
PK15963.1
N
0.746
Glyma01g36670.1
Glycine max
Glyma01g36670.1
N
0.761
Glyma16g23010.1
Glycine max
Glyma16g23010.1
N
0.718
Glyma02g04980.1
Glycine max
Glyma02g04980.1
N
0.718
Medtr8g088990
Medicago truncatula
Medtr8g088990
N
0.746
Medtr5g023040
Medicago truncatula
Medtr5g023040
N
0.732
BGIOSIBCE023334
Oryza indica
BGIOSIBCE023334
N
0.859
LOC_Os06g50890
Oryza sativa
LOC_Os06g50890
N
0.859
PDK_20s1771821g002
Phoenix dactylifera
PDK_20s1771821g002
N
0.704
29784.m000370
Ricinus communis
29784.m000370
N
0.704
SB10G030460
Sorghum bicolor
Sb10g030460
N
0.803
GSVIVG00005197001
Vitis vinifera
GSVIVG00005197001
N
0.704
GRMZM2G152111
Zea mays
GRMZM2G152111
N
0.775