LOC_Os06g50890 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os06g50890 T45070_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os06g50890.1 RRM 67 137
LOC_Os06g50890.2 RRM 67 137
LOC_Os06g50890.4 RRM 67 137
LOC_Os06g50890.5 RRM 67 137

Links

Other RRM family RBPs
Other Oryza sativa RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE023334 Oryza indica BGIOSIBCE023334 N 1.000
GRMZM2G152111 Zea mays GRMZM2G152111 N 0.887
SB10G030460 Sorghum bicolor Sb10g030460 N 0.887
BRADI1G29990 Brachypodium distachyon BRADI1G29990 N 0.859
PK15963.1 Cannabis sativa PK15963.1 N 0.803
Glyma01g36670.1 Glycine max Glyma01g36670.1 N 0.789
Glyma02g04980.1 Glycine max Glyma02g04980.1 N 0.775
Glyma16g23010.1 Glycine max Glyma16g23010.1 N 0.775
Medtr8g088990 Medicago truncatula Medtr8g088990 N 0.775
Medtr5g023040 Medicago truncatula Medtr5g023040 N 0.775
PDK_20s1771821g002 Phoenix dactylifera PDK_20s1771821g002 N 0.761
GSVIVG00005197001 Vitis vinifera GSVIVG00005197001 N 0.761
mgf018316m Mimulus guttatus mgf018316m N 0.746
mgf010666m Mimulus guttatus mgf010666m N 0.746
29784.m000370 Ricinus communis 29784.m000370 N 0.746
XM_002867008.1 Arabidopsis lyrata scaffold_700530.1 N 0.746
mgf000980m Mimulus guttatus mgf000980m N 0.746
B9MX89_POPTR Populus trichocarpa POPTR_0005s10780 N 0.732
MDP0000304811 Malus x domestica MDP0000304811 N 0.732
cassava35282.valid.m1 Manihot esculenta cassava35282.valid.m1 N 0.732
ppa010685m Prunus persica ppa010685m N 0.732
AT4G35785 Arabidopsis thaliana AT4G35785-TAIR-G N 0.718
MDP0000285029 Malus x domestica MDP0000285029 N 0.718
Cucsa.043980 Cucumis sativus Cucsa.043980 N 0.718
LOC_Os08g29650 Oryza sativa LOC_Os08g29650 N 0.704
BGIOSIBSE038661 Oryza indica BGIOSIBSE038661 N 0.704
B9GWT8_POPTR Populus trichocarpa POPTR_0003s13030 N 0.704
PDK_20s1416111g002 Phoenix dactylifera PDK_20s1416111g002 N 0.704
mgf011871m Mimulus guttatus mgf011871m N 0.704
30190.m011248 Ricinus communis 30190.m011248 N 0.704
SB07G019390 Sorghum bicolor Sb07g019390 N 0.704