CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ANIA_04799
(
Aspergillus nidulans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADANIAG00005622
T33625_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANIAP00005622
RRM
111
182
LLISELHWWTTDDDIRGWTREAGCEDELKDVTFSEHKVNGKSKGQAFLEFTSLPAATATKHHIDSLSTTGQS
Links
Other
RRM
family RBPs
Other
Aspergillus nidulans
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_034850
Aspergillus clavatus
CADACLAG00004062
N
0.792
AFLA_101100
Aspergillus flavus
CADAFLAG00011847
N
0.784
AFUA_3G06890
Aspergillus fumigatus
CADAFUAG00005682
N
0.764
AO090020000304
Aspergillus oryzae
CADAORAG00006798
N
0.784
ATEG_08730
Aspergillus terreus
CADATEAG00006712
N
0.784
CHGG_06434
Chaetomium globosum
CHGG_06434
N
0.708
CIMG_00383
Coccidioides immitis
CIMG_00383
N
0.722
CPSG_05134
Coccidioides posadasii
CPSG_05134
N
0.722
HCAG_07243
Histoplasma capsulatum
HCAG_07243
N
0.722
NFIA_070360
Neosartorya fischeri
CADNFIAG00005684
N
0.764
NCU02152
Neurospora crassa
NCU02152
N
0.736
fgenesh3_pm.C_scaffold_2000208
Neurospora discreta
fgenesh3_pm.C_scaffold_2000208
N
0.736
estExt_fgenesh1_pg.C_70148
Neurospora tetrasperma
estExt_fgenesh1_pg.C_70148
N
0.736
UREG_00439
Uncinocarpus reesii
UREG_00439
N
0.712