CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HCAG_07243
(
Histoplasma capsulatum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
HCAG_07243
T29489_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
HCAG_07243T0
RRM
122
192
LFVSDLYWWTTDDDIRGWVNQAGVEDELKDVTFSEHKVNGKSKGQAFVEFRSSQAATATKHKIESFNTQQS
Links
Other
RRM
family RBPs
Other
Histoplasma capsulatum
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABG_00859
Paracoccidioides brasiliensis
PABG_00859
N
0.944
UREG_00439
Uncinocarpus reesii
UREG_00439
N
0.795
CPSG_05134
Coccidioides posadasii
CPSG_05134
N
0.789
ATEG_08730
Aspergillus terreus
CADATEAG00006712
N
0.784
ACLA_034850
Aspergillus clavatus
CADACLAG00004062
N
0.775
NFIA_070360
Neosartorya fischeri
CADNFIAG00005684
N
0.775
AFUA_3G06890
Aspergillus fumigatus
CADAFUAG00005682
N
0.775
CIMG_00383
Coccidioides immitis
CIMG_00383
N
0.775
GSTUMT00002679001
Tuber melanosporum
GSTUMT00002679001
N
0.746
MCYG_08048
Microsporum canis
MCYG_08048
N
0.743
AFLA_101100
Aspergillus flavus
CADAFLAG00011847
N
0.743
AO090020000304
Aspergillus oryzae
CADAORAG00006798
N
0.743
ANIA_04799
Aspergillus nidulans
CADANIAG00005622
N
0.722
fgenesh3_pm.C_scaffold_2000208
Neurospora discreta
fgenesh3_pm.C_scaffold_2000208
N
0.718
MGYG_05499
Microsporum gypseum
MGYG_05499
N
0.711
BC1G_15622
Botrytis cinerea
BC1G_15622
N
0.704
NCU02152
Neurospora crassa
NCU02152
N
0.704
estExt_fgenesh1_pg.C_70148
Neurospora tetrasperma
estExt_fgenesh1_pg.C_70148
N
0.704
PMAA_002860
Penicillium marneffei
PMAA_002860
N
0.704