ENSCSAVG00000004246 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000004246 T35972_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.735
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.735
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.735
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.728
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000007099 RRM 30 98
ENSCSAVP00000007099 RRM 122 151
ENSCSAVP00000007100 RRM 15 85
ENSCSAVP00000007100 RRM 103 171
ENSCSAVP00000007100 RRM 195 264
ENSCSAVP00000007100 RRM 297 365
ENSCSAVP00000007101 RRM 17 87
ENSCSAVP00000007101 RRM 105 173
ENSCSAVP00000007101 RRM 197 266
ENSCSAVP00000007101 RRM 301 369
ENSCSAVP00000007102 RRM 1 70
ENSCSAVP00000007102 RRM 88 156
ENSCSAVP00000007102 RRM 180 249
ENSCSAVP00000007102 RRM 282 350
ENSCSAVP00000007103 RRM 13 83
ENSCSAVP00000007103 RRM 101 169
ENSCSAVP00000007103 RRM 193 262
ENSCSAVP00000007103 RRM 295 363

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

127 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.000
PCBP3 Homo sapiens ENSG00000183570 I 0.000
ENSMGAG00000005386 Meleagris gallopavo ENSMGAG00000005386 N 0.000
XR_030450.1 Monodelphis domestica ENSMODG00000016543 N 0.000
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.000
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.000
PCBP1 Tarsius syrichta ENSTSYG00000011282 N 0.000
PCBP1 Tupaia belangeri ENSTBEG00000015706 N 0.000