CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ENSCSAVG00000004246
(
Ciona savignyi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCSAVG00000004246
T35972_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.735
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.735
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.735
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.728
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCSAVP00000007099
RRM
30
98
IFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENGSKGYGFVHFETEEAGSRAIEKVNGMLLNDKKVF
ENSCSAVP00000007099
RRM
122
151
VYIKNFSDKLDEKALQAMFEPAFKYNQSVR
ENSCSAVP00000007100
RRM
15
85
LYVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNYDPIKGRPIR
ENSCSAVP00000007100
RRM
103
171
IFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENGSKGYGFVHFETEEAGSRAIEKVNGMLLNDKKVF
ENSCSAVP00000007100
RRM
195
264
VYIKNFSDKLDEKALQAMFEQHGVVKSVAVMRDRDGNSRGFGFVAMETHEEAQIACEAMNGMEVEGNSCD
ENSCSAVP00000007100
RRM
297
365
LYVKNLDDNVTDDELREAFSTYGTITSAKIMSDGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY
ENSCSAVP00000007101
RRM
17
87
LYVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNYDPIKGRPIR
ENSCSAVP00000007101
RRM
105
173
IFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENGSKGYGFVHFETEEAGSRAIEKVNGMLLNDKKVF
ENSCSAVP00000007101
RRM
197
266
VYIKNFSDKLDEKALQAMFEQHGVVKSVAVMRDRDGNSRGFGFVAMETHEEAQIACEAMNGMEVEGNSCD
ENSCSAVP00000007101
RRM
301
369
LYVKNLDDNVTDDELREAFSTYGTITSAKIMSDGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY
ENSCSAVP00000007102
RRM
1
70
YVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNYDPIKGRPIR
ENSCSAVP00000007102
RRM
88
156
IFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENGSKGYGFVHFETEEAGSRAIEKVNGMLLNDKKVF
ENSCSAVP00000007102
RRM
180
249
VYIKNFSDKLDEKALQAMFEQHGVVKSVAVMRDRDGNSRGFGFVAMETHEEAQIACEAMNGMEVEGNSCD
ENSCSAVP00000007102
RRM
282
350
LYVKNLDDNVTDDELREAFSTYGTITSAKIMSDGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY
ENSCSAVP00000007103
RRM
13
83
LYVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNYDPIKGRPIR
ENSCSAVP00000007103
RRM
101
169
IFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENGSKGYGFVHFETEEAGSRAIEKVNGMLLNDKKVF
ENSCSAVP00000007103
RRM
193
262
VYIKNFSDKLDEKALQAMFEQHGVVKSVAVMRDRDGNSRGFGFVAMETHEEAQIACEAMNGMEVEGNSCD
ENSCSAVP00000007103
RRM
295
363
LYVKNLDDNVTDDELREAFSTYGTITSAKIMSDGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY
Links
Other
RRM
family RBPs
Other
Ciona savignyi
RBPs
127 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100408015
Callithrix jacchus
ENSCJAG00000001903
I
0.000
PCBP3
Homo sapiens
ENSG00000183570
I
0.000
ENSMGAG00000005386
Meleagris gallopavo
ENSMGAG00000005386
N
0.000
XR_030450.1
Monodelphis domestica
ENSMODG00000016543
N
0.000
ENSMODG00000017748
Monodelphis domestica
ENSMODG00000017748
I
0.000
PCBP2
Sus scrofa
ENSSSCG00000000274
I
0.000
PCBP1
Tarsius syrichta
ENSTSYG00000011282
N
0.000
PCBP1
Tupaia belangeri
ENSTBEG00000015706
N
0.000