ENSCSAVG00000004246 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000004246 T35972_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.735
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.735
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.735
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.728
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000007099 RRM 30 98
ENSCSAVP00000007099 RRM 122 151
ENSCSAVP00000007100 RRM 15 85
ENSCSAVP00000007100 RRM 103 171
ENSCSAVP00000007100 RRM 195 264
ENSCSAVP00000007100 RRM 297 365
ENSCSAVP00000007101 RRM 17 87
ENSCSAVP00000007101 RRM 105 173
ENSCSAVP00000007101 RRM 197 266
ENSCSAVP00000007101 RRM 301 369
ENSCSAVP00000007102 RRM 1 70
ENSCSAVP00000007102 RRM 88 156
ENSCSAVP00000007102 RRM 180 249
ENSCSAVP00000007102 RRM 282 350
ENSCSAVP00000007103 RRM 13 83
ENSCSAVP00000007103 RRM 101 169
ENSCSAVP00000007103 RRM 193 262
ENSCSAVP00000007103 RRM 295 363

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

127 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.701
AAEL010318 Aedes aegypti AAEL010318 I 0.712
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.710
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.721
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.739
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.721
AGAP011092 Anopheles gambiae AGAP011092 I 0.722
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.701
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.701
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.701
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.719
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.731
PABPC1L Bos taurus ENSBTAG00000016849 I 0.714
Bm1_16080 Brugia malayi Bm1_16080 I 0.708
Bm1_06880 Brugia malayi Bm1_06880 I 0.708
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.714
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.707
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.739
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.731
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.703
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.731
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.739
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.708
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.731
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.928
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.911
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.712
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.712
pabpc4 Danio rerio ENSDARG00000059259 I 0.724
pabpc1b Danio rerio ENSDARG00000021140 I 0.739
pabpc1a Danio rerio ENSDARG00000017219 I 0.735
pabpc1l Danio rerio ENSDARG00000002597 I 0.717
LOC100054235 Equus caballus ENSECAG00000009396 I 0.731
LOC100070836 Equus caballus ENSECAG00000022681 I 0.707
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.728
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.707
PABPC4 Gallus gallus ENSGALG00000003800 I 0.724
PABPC1L Gallus gallus ENSGALG00000004123 I 0.717
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.742
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.714
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.721
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.731
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.710
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.731
PABPC1 Homo sapiens ENSG00000070756 D 0.739
PABPC4 Homo sapiens ENSG00000090621 D 0.731
PABPC1L Homo sapiens ENSG00000101104 I 0.710
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.705
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.705
ISCW014211 Ixodes scapularis ISCW014211 I 0.705
LOAG_01058 Loa loa LOAG_01058 I 0.708
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.704
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.731
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.739
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.714
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.731
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.739
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.710
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.717
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.721
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.707
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.731
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.707
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.735
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.714
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.717
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.718
Gm10110 Mus musculus ENSMUSG00000062093 I 0.728
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.728
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.714
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.739
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.739
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.731
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.724
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.739
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.707
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.739
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.731
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.739
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.724
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.721
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.742
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.731
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.735
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.710
PHUM617090 Pediculus humanus PHUM617090 I 0.705
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.739
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.731
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.714
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.710
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.739
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.710
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.739
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.721
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.735
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.714
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.731
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.703
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.739
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.739
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.716
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.724
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.721
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.739
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.724
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.746
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.717
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.746
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.706
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.717
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.739
CAA40721 Xenopus laevis CAA40721 I 0.742
AAK29408 Xenopus laevis AAK29408 I 0.710
P20965 Xenopus laevis P20965 I 0.742
Q6GR16 Xenopus laevis Q6GR16 I 0.710
Q98SP8 Xenopus laevis Q98SP8 I 0.710
Q6IP09 Xenopus laevis Q6IP09 I 0.731
AAI08463 Xenopus laevis AAI08463 I 0.731
AAH80020 Xenopus laevis AAH80020 I 0.710
AAH73435 Xenopus laevis AAH73435 I 0.717
AAH72110 Xenopus laevis AAH72110 I 0.731
AAH71118 Xenopus laevis AAH71118 I 0.710
AAH52100 Xenopus laevis AAH52100 I 0.742
AAA60936 Xenopus laevis AAA60936 I 0.739
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.710
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.735