CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ESRP1
(
Erinaceus europaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSEEUG00000001673
T36740_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ESRP2
M141_0.6
Homo sapiens
UGGGRAD
RNAcompete
Ray et al.(2013)
RNCMPT00150
0.718
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000001520
RRM
140
209
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRNLALQRHKHHMGTRYIE
ENSEEUP00000001520
RRM
241
313
VRMRGLPFTATADEVVAFFGQHCPITGEKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSEEUP00000001520
RRM
360
432
IRLRGLPYAATIEDILDFMGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVE
Links
Other
RRM
family RBPs
Other
Erinaceus europaeus
RBPs
70 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R015210
Ailuropoda melanoleuca
Ame_R015210
I
0.977
Ame_R011562
Ailuropoda melanoleuca
Ame_R011562
I
0.708
ESRP1
Anolis carolinensis
ENSACAG00000003748
I
0.903
ESRP2
Anolis carolinensis
ENSACAG00000009900
I
0.806
LOC788414
Bos taurus
ENSBTAG00000021838
I
0.972
ESRP2
Bos taurus
ENSBTAG00000004375
I
0.708
LOC100386717
Callithrix jacchus
ENSCJAG00000000043
I
0.977
LOC100388530
Callithrix jacchus
ENSCJAG00000015709
I
0.708
ESRP1
Canis familiaris
ENSCAFG00000009305
I
0.977
ESRP2
Canis familiaris
ENSCAFG00000020320
I
0.708
ESRP1
Cavia porcellus
ENSCPOG00000012197
I
0.972
esrp1
Danio rerio
ENSDARG00000011245
I
0.810
esrp2
Danio rerio
ENSDARG00000018814
I
0.824
ESRP2
Dasypus novemcinctus
ENSDNOG00000018588
I
0.764
Esrp2
Dipodomys ordii
ENSDORG00000000665
I
0.773
Esrp1
Dipodomys ordii
ENSDORG00000011987
N
0.806
ESRP2
Echinops telfairi
ENSETEG00000006068
I
0.773
ESRP1
Equus caballus
ENSECAG00000000784
I
0.977
LOC100066567
Equus caballus
ENSECAG00000017375
I
0.704
ESRP2
Erinaceus europaeus
ENSEEUG00000014033
I
0.704
ESRP2
Felis catus
ENSFCAG00000010419
I
0.708
ESRP1
Felis catus
ENSFCAG00000009920
I
0.977
ESRP2_CHICK
Gallus gallus
ENSGALG00000003374
I
0.819
RBM35A
Gallus gallus
ENSGALG00000015968
I
0.903
ESRP2
Gasterosteus aculeatus
ENSGACG00000016359
N
0.788
ESRP2
Gorilla gorilla
ENSGGOG00000010150
I
0.718
ESRP1
Gorilla gorilla
ENSGGOG00000003627
I
0.981
ESRP1
Homo sapiens
ENSG00000104413
I
0.981
ESRP2
Homo sapiens
ENSG00000103067
D
0.718
ESRP1
Loxodonta africana
ENSLAFG00000001498
I
0.972
ESRP2
Loxodonta africana
ENSLAFG00000014609
I
0.755
ESRP2
Macaca mulatta
ENSMMUG00000021846
I
0.708
ESRP1
Macaca mulatta
ENSMMUG00000021112
I
0.968
ESRP2
Macropus eugenii
ENSMEUG00000014322
I
0.815
ESRP1
Meleagris gallopavo
ENSMGAG00000012042
I
0.903
ESRP2
Meleagris gallopavo
ENSMGAG00000003943
I
0.819
ESRP1
Microcebus murinus
ENSMICG00000008757
I
0.972
ESRP2
Monodelphis domestica
ENSMODG00000005183
I
0.787
ESRP1
Monodelphis domestica
ENSMODG00000007268
I
0.949
Esrp1
Mus musculus
ENSMUSG00000040728
I
0.958
Esrp2
Mus musculus
ENSMUSG00000084128
I
0.704
ESRP1
Myotis lucifugus
ENSMLUG00000001816
N
0.801
ESRP2
Myotis lucifugus
ENSMLUG00000005934
I
0.764
ESRP2
Ochotona princeps
ENSOPRG00000013401
I
0.759
ESRP1
Ochotona princeps
ENSOPRG00000010595
N
0.810
ESRP2
Ornithorhynchus anatinus
ENSOANG00000010972
I
0.778
ESRP1
Ornithorhynchus anatinus
ENSOANG00000004746
I
0.963
ESRP1
Oryctolagus cuniculus
ENSOCUG00000001316
I
0.968
ESRP2
Oryctolagus cuniculus
ENSOCUG00000001242
I
0.708
ESRP1
Pan troglodytes
ENSPTRG00000020430
I
0.981
ESRP2
Pan troglodytes
ENSPTRG00000008261
I
0.713
ENSPPYG00000018753
Pongo pygmaeus
ENSPPYG00000018753
I
0.981
ENSPPYG00000007484
Pongo pygmaeus
ENSPPYG00000007484
I
0.713
ESRP2
Procavia capensis
ENSPCAG00000005215
I
0.773
ESRP1
Pteropus vampyrus
ENSPVAG00000014513
I
0.977
RGD1560481
Rattus norvegicus
ENSRNOG00000008184
I
0.958
Esrp2
Rattus norvegicus
ENSRNOG00000023177
I
0.759
ESRP2
Sorex araneus
ENSSARG00000014176
I
0.759
ESRP1
Sus scrofa
ENSSSCG00000006099
I
0.977
RBM35B
Taeniopygia guttata
ENSTGUG00000006986
I
0.810
RBM35A
Taeniopygia guttata
ENSTGUG00000011907
I
0.912
ESRP1
Takifugu rubripes
ENSTRUG00000009287
N
0.739
ESRP1
Tarsius syrichta
ENSTSYG00000006036
I
0.963
ESRP1
Tetraodon nigroviridis
ENSTNIG00000018367
N
0.743
ESRP1
Tursiops truncatus
ENSTTRG00000004226
I
0.968
ESRP2
Tursiops truncatus
ENSTTRG00000014613
I
0.704
ESRP1
Vicugna pacos
ENSVPAG00000006566
I
0.968
AAH44002
Xenopus laevis
AAH44002
I
0.912
Q7ZY29
Xenopus laevis
Q7ZY29
I
0.912
esrp1
Xenopus tropicalis
ENSXETG00000014667
I
0.912