CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MYEF2
(
Erinaceus europaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSEEUG00000006405
T36783_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000005909
RRM
123
162
XXXGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAXXXX
ENSEEUP00000005909
RRM
236
305
IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMH
ENSEEUP00000005909
RRM
549
593
VMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGREID
Links
Other
RRM
family RBPs
Other
Erinaceus europaeus
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI1G05970
Brachypodium distachyon
BRADI1G05970
N
0.000
BRADI1G74560
Brachypodium distachyon
BRADI1G74560
N
0.000
BRADI4G02150
Brachypodium distachyon
BRADI4G02150
N
0.000
PK23716.1
Cannabis sativa
PK23716.1
N
0.000
Cucsa.142200
Cucumis sativus
Cucsa.142200
N
0.000
Glyma05g30020.1
Glycine max
Glyma05g30020.1
N
0.000
Glyma08g13130.1
Glycine max
Glyma08g13130.1
N
0.000
LjSGA_011466.1
Lotus japonicus
LjSGA_011466.1
N
0.000
cassava30728.valid.m1
Manihot esculenta
cassava30728.valid.m1
N
0.000
cassava35660.valid.m1
Manihot esculenta
cassava35660.valid.m1
N
0.000
cassava35661.valid.m1
Manihot esculenta
cassava35661.valid.m1
N
0.000
cassava35662.valid.m1
Manihot esculenta
cassava35662.valid.m1
N
0.000
cassava35663.valid.m1
Manihot esculenta
cassava35663.valid.m1
N
0.000
cassava35665.valid.m1
Manihot esculenta
cassava35665.valid.m1
N
0.000
cassava35666.valid.m1
Manihot esculenta
cassava35666.valid.m1
N
0.000
cassava35667.valid.m1
Manihot esculenta
cassava35667.valid.m1
N
0.000
cassava38866.m1
Manihot esculenta
cassava38866.m1
N
0.000
cassava38867.m1
Manihot esculenta
cassava38867.m1
N
0.000
cassava35659.valid.m1
Manihot esculenta
cassava35659.valid.m1
N
0.000
cassava35658.valid.m1
Manihot esculenta
cassava35658.valid.m1
N
0.000
cassava35657.valid.m1
Manihot esculenta
cassava35657.valid.m1
N
0.000
cassava12386.valid.m1
Manihot esculenta
cassava12386.valid.m1
N
0.000
cassava12387.valid.m1
Manihot esculenta
cassava12387.valid.m1
N
0.000
cassava12388.valid.m1
Manihot esculenta
cassava12388.valid.m1
N
0.000
cassava12389.valid.m1
Manihot esculenta
cassava12389.valid.m1
N
0.000
cassava30727.valid.m1
Manihot esculenta
cassava30727.valid.m1
N
0.000
cassava30729.valid.m1
Manihot esculenta
cassava30729.valid.m1
N
0.000
mgf009938m
Mimulus guttatus
mgf009938m
N
0.000
mgf013853m
Mimulus guttatus
mgf013853m
N
0.000
mgf013935m
Mimulus guttatus
mgf013935m
N
0.000
BGIOSIBCE009738
Oryza indica
BGIOSIBCE009738
N
0.000
LOC_Os03g06240
Oryza sativa
LOC_Os03g06240
N
0.000
LOC_Os03g53670
Oryza sativa
LOC_Os03g53670
N
0.000
PDK_20s1308332g001
Phoenix dactylifera
PDK_20s1308332g001
N
0.000
PDK_20s1441394g001
Phoenix dactylifera
PDK_20s1441394g001
N
0.000
B9GLB9_POPTR
Populus trichocarpa
POPTR_0001s03940
N
0.000
30169.m006347
Ricinus communis
30169.m006347
N
0.000
Sb01g046550
Sorghum bicolor
Sb01g046550
N
0.000
SB01G008170
Sorghum bicolor
Sb01g008170
N
0.000
GSVIVG00025494001
Vitis vinifera
GSVIVG00025494001
N
0.000
GRMZM2G126338
Zea mays
GRMZM2G126338
N
0.000
GRMZM2G330019
Zea mays
GRMZM2G330019
N
0.000
GRMZM2G076062
Zea mays
GRMZM2G076062
N
0.000