CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MYEF2
(
Spermophilus tridecemlineatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSTOG00000007740
T41605_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000006938
RRM
63
118
XDLMREKVGEVTYVELFKDAEGKSRXXXVVEFKDEEFVKKALETMNKYDLSGRPLN
ENSSTOP00000006938
RRM
181
250
IFVANLDFKVCWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMH
ENSSTOP00000006938
RRM
495
539
VMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGREID
Links
Other
RRM
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MYEF2
Ochotona princeps
ENSOPRG00000003919
N
0.872
MYEF2
Erinaceus europaeus
ENSEEUG00000006405
N
0.842
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.821
MYEF2
Sorex araneus
ENSSARG00000003264
N
0.800
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.786
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.786
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.786
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.786
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.786
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.786
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.786
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.786
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.786
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.786
MYEF2
Homo sapiens
ENSG00000104177
N
0.786
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.786
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.786
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.786
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.786
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.786
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.786
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.786
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.781
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.781
Myef2
Mus musculus
ENSMUSG00000027201
N
0.776
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.776
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.748
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.739
MYEF2
Otolemur garnettii
ENSOGAG00000010907
N
0.737
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.719
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.710
AAI08588
Xenopus laevis
AAI08588
N
0.705
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.701