CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R005511
(
Ailuropoda melanoleuca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Ame_R005511
T55530_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R005511
RRM
51
121
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLN
Ame_R005511
RRM
184
253
IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMH
Ame_R005511
RRM
471
539
IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGREID
Links
Other
RRM
family RBPs
Other
Ailuropoda melanoleuca
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MYEF2
Homo sapiens
ENSG00000104177
N
1.000
LOC100070256
Equus caballus
ENSECAG00000005741
N
1.000
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
1.000
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
1.000
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
1.000
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
1.000
MYEF2
Canis familiaris
ENSCAFG00000014008
N
1.000
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
1.000
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
1.000
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
1.000
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
1.000
MYEF2
Procavia capensis
ENSPCAG00000016660
N
1.000
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
1.000
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.995
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.995
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.995
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.995
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.995
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.995
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.990
Myef2
Mus musculus
ENSMUSG00000027201
N
0.990
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.953
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.952
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.933
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.914
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.910
AAI08588
Xenopus laevis
AAI08588
N
0.905
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.896
MYEF2
Otolemur garnettii
ENSOGAG00000010907
N
0.895
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.887
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.886
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.886
MYEF2
Sorex araneus
ENSSARG00000003264
N
0.881
MYEF2
Ochotona princeps
ENSOPRG00000003919
N
0.876
myef2
Danio rerio
ENSDARG00000059398
N
0.867
Gm9833
Mus musculus
ENSMUSG00000049230
N
0.790
MYEF2
Spermophilus tridecemlineatus
ENSSTOG00000007740
N
0.786
MYEF2
Pteropus vampyrus
ENSPVAG00000004102
N
0.776
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.773
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.773
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.773
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.773
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.773
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.773
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.773
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.773
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.773
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.773
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.773
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.773
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.773
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.773
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.773
HNRNPM
Homo sapiens
ENSG00000099783
N
0.773
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.773
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.773
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.773
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.768
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.768
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.768
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.764
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.763
MYEF2
Myotis lucifugus
ENSMLUG00000006781
N
0.762
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.758
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.755
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.754
MYEF2
Ornithorhynchus anatinus
ENSOANG00000007375
N
0.748
HNRNPM
Gasterosteus aculeatus
ENSGACG00000010265
N
0.743
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.741
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.733
AAI34826
Xenopus laevis
AAI34826
N
0.730
HNRNPM
Spermophilus tridecemlineatus
ENSSTOG00000008112
N
0.724
HNRNPM
Ochotona princeps
ENSOPRG00000001943
N
0.722
HNRNPM
Takifugu rubripes
ENSTRUG00000013783
N
0.719
HNRNPM
Tetraodon nigroviridis
ENSTNIG00000015530
N
0.714
HNRNPM
Macropus eugenii
ENSMEUG00000004789
N
0.708
HNRNPM
Dasypus novemcinctus
ENSDNOG00000012157
N
0.708
MYEF2
Erinaceus europaeus
ENSEEUG00000006405
N
0.700