CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ESRP2
(
Gorilla gorilla
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGGOG00000010150
T37839_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ESRP2
M141_0.6
Homo sapiens
UGGGRAD
RNAcompete
Ray et al.(2013)
RNCMPT00150
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000009911
RRM
249
317
VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYI
ENSGGOP00000009911
RRM
373
422
PVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE
ENSGGOP00000009911
RRM
467
539
VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVE
ENSGGOP00000027305
RRM
249
317
VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYI
ENSGGOP00000027305
RRM
373
422
PVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE
ENSGGOP00000027305
RRM
467
539
VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVE
Links
Other
RRM
family RBPs
Other
Gorilla gorilla
RBPs
67 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI3G21360
Brachypodium distachyon
BRADI3G21360
N
0.000
BRADI3G30430
Brachypodium distachyon
BRADI3G30430
N
0.000
Cucsa.127380
Cucumis sativus
Cucsa.127380
I
0.000
Glyma01g38120.1
Glycine max
Glyma01g38120.1
N
0.000
chr4.CM0165.550.nd
Lotus japonicus
chr4.CM0165.550.nd
N
0.000
MDP0000744216
Malus x domestica
MDP0000744216
N
0.000
mgf003371m
Mimulus guttatus
mgf003371m
N
0.000
LOC_Os10g02630
Oryza sativa
LOC_Os10g02630
N
0.000
B9HEV8_POPTR
Populus trichocarpa
POPTR_0007s12690
I
0.000
29634.m002163
Ricinus communis
29634.m002163
N
0.000
SB01G039540
Sorghum bicolor
Sb01g039540
N
0.000
SB01G026920
Sorghum bicolor
Sb01g026920
N
0.000
GSVIVG00018981001
Vitis vinifera
GSVIVG00018981001
N
0.000
GRMZM2G113592
Zea mays
GRMZM2G113592
N
0.000