D7R608_RABIT (Oryctolagus cuniculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOCUG00000015871 T39719_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.991
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.991
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.991
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.991
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.991
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.991
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.807
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.807
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.807
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.783
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.783
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.783
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000013630 RRM 29 99
ENSOCUP00000013630 RRM 115 183
ENSOCUP00000013630 RRM 253 323

Links

Other RRM family RBPs
Other Oryctolagus cuniculus RBPs

170 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R009554 Ailuropoda melanoleuca Ame_R009554 N 0.000
fgenesh1_pg.00009_#_218 Aspergillus carbonarius fgenesh1_pg.00009_#_218 N 0.000
Q2YDG6_BOVIN Bos taurus ENSBTAG00000016014 N 0.000
LOC100391607 Callithrix jacchus ENSCJAG00000001466 N 0.000
NUPL2 Canis familiaris ENSCAFG00000002749 N 0.000
NUPL2 Cavia porcellus ENSCPOG00000015063 N 0.000
NUPL2 Danio rerio ENSDARG00000029043 N 0.000
NUPL2 Echinops telfairi ENSETEG00000011238 N 0.000
NUPL2 Erinaceus europaeus ENSEEUG00000006736 N 0.000
NUPL2 Felis catus ENSFCAG00000005813 N 0.000
NUPL2 Gasterosteus aculeatus ENSGACG00000007219 N 0.000
NUPL2 Gorilla gorilla ENSGGOG00000001038 N 0.000
NUPL2 Homo sapiens ENSG00000136243 N 0.000
NUPL2 Loxodonta africana ENSLAFG00000007523 N 0.000
NUPL2 Macaca mulatta ENSMMUG00000001560 N 0.000
NUPL2 Microcebus murinus ENSMICG00000013654 N 0.000
NUPL2 Monodelphis domestica ENSMODG00000025473 N 0.000
Nupl2 Mus musculus ENSMUSG00000048439 N 0.000
NUPL2 Ochotona princeps ENSOPRG00000013966 N 0.000
NUPL2 Oryctolagus cuniculus ENSOCUG00000014808 N 0.000
NUPL2 Oryzias latipes ENSORLG00000005203 N 0.000
NUPL2 Otolemur garnettii ENSOGAG00000017153 N 0.000
NUPL2 Pan troglodytes ENSPTRG00000018983 N 0.000
ENSPPYG00000017733 Pongo pygmaeus ENSPPYG00000017733 N 0.000
NUPL2 Procavia capensis ENSPCAG00000010062 N 0.000
NUPL2 Pteropus vampyrus ENSPVAG00000008475 N 0.000
Nupl2 Rattus norvegicus ENSRNOG00000010435 N 0.000
NUPL2 Spermophilus tridecemlineatus ENSSTOG00000008486 N 0.000
NUPL2 Tarsius syrichta ENSTSYG00000003372 N 0.000
NUPL2 Tetraodon nigroviridis ENSTNIG00000001691 N 0.000
NUPL2 Tupaia belangeri ENSTBEG00000001635 N 0.000
NUPL2 Tursiops truncatus ENSTTRG00000012802 N 0.000
NUPL2 Vicugna pacos ENSVPAG00000000609 N 0.000